Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PSH91_RS04110 Genome accession   NZ_CP117465
Coordinates   929946..931538 (-) Length   530 a.a.
NCBI ID   WP_139051188.1    Uniprot ID   -
Organism   Pseudomonas sp. FP1154     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 924946..936538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH91_RS04090 (PSH91_04090) - 925250..925651 (+) 402 WP_076386375.1 type IV pilin protein -
  PSH91_RS04095 (PSH91_04095) thiO 925707..926807 (+) 1101 WP_047230179.1 glycine oxidase ThiO -
  PSH91_RS04100 (PSH91_04100) - 928141..928506 (+) 366 WP_139051190.1 DUF6124 family protein -
  PSH91_RS04105 (PSH91_04105) pilR 928603..929949 (-) 1347 WP_076386371.1 sigma-54 dependent transcriptional regulator Regulator
  PSH91_RS04110 (PSH91_04110) pilS 929946..931538 (-) 1593 WP_139051188.1 nitrogen regulation protein NR(II) Regulator
  PSH91_RS04115 (PSH91_04115) - 931528..931761 (-) 234 WP_047229875.1 PP0621 family protein -
  PSH91_RS04120 (PSH91_04120) - 931885..932901 (-) 1017 WP_047229874.1 outer membrane protein assembly factor BamD -
  PSH91_RS04125 (PSH91_04125) rluD 933053..934015 (+) 963 WP_047229873.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSH91_RS04130 (PSH91_04130) pgeF 934012..934737 (+) 726 WP_305467384.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58872.68 Da        Isoelectric Point: 7.4330

>NTDB_id=785829 PSH91_RS04110 WP_139051188.1 929946..931538(-) (pilS) [Pseudomonas sp. FP1154]
MTAEQASSPRVKQAQRLLRLYHLYRLSIGITLVLLISSNMDNRLLEFANDDLLRSGSWLYLVLNILLVVFLENTRRPARL
FGLALTDVLLLSWLFYAAGGAPSAIGNLLIVSVAIGNTLLRGRIGLLIAAVATLGIVGSSFFLDLSDSSRPSSYLQAGTL
GALCFAAALLVQGLTRRLEASEILAEQRASEVVGLEALNALILQRMRTGILVLDRQRRVQLANESALNLLGMHDLVGQRL
DDCSGALVERLQLWLNNPSLRPQSLTINGTGLTLQPSFIALGHHDQHQILVFLEDLAQVAQHAQQLKLASLGRLTAGIAH
EIRNPLGAISHAAQLLRESEELNSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTTPQRLDLRIWLDQFVRQARENAAG
HQHLHLSIDPGDYLTLMDPDQLTQVLDNLLRNAWRHSAMAHEEAEVWLKLFIDPHSQLSTLDIIDNGPGVTPDQQAHLFE
PFFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=785829 PSH91_RS04110 WP_139051188.1 929946..931538(-) (pilS) [Pseudomonas sp. FP1154]
GTGACCGCTGAGCAAGCCTCAAGCCCTCGCGTCAAACAGGCGCAGCGCCTGCTGCGTCTCTATCACCTGTACCGTCTAAG
CATCGGCATCACCCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGGAGTTCGCCAACGACGATTTGCTGC
GCAGCGGCAGCTGGTTGTATCTGGTGCTGAATATCCTGCTGGTGGTGTTTCTTGAAAATACCCGCCGCCCAGCCCGGCTG
TTCGGCCTGGCTCTGACCGACGTGCTGTTGTTGTCGTGGCTGTTCTACGCTGCCGGCGGCGCCCCCAGCGCCATCGGCAA
CCTGCTCATCGTCTCGGTGGCCATCGGCAATACGTTGTTGCGAGGCCGAATTGGCCTGTTGATTGCAGCTGTCGCTACGC
TGGGCATCGTCGGGTCGAGCTTCTTCCTTGACCTCAGCGATTCGAGCCGTCCCAGCAGTTATCTGCAGGCCGGTACCCTG
GGGGCCTTGTGTTTTGCCGCCGCGCTGCTGGTGCAAGGCCTGACCCGACGCCTGGAAGCCAGTGAAATCCTCGCCGAACA
ACGGGCCAGCGAAGTAGTCGGTCTGGAAGCGCTCAACGCACTGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTCG
ATCGCCAGCGCCGGGTGCAATTGGCTAACGAAAGCGCATTGAACCTGTTGGGCATGCACGACCTGGTCGGCCAGCGGCTC
GACGACTGCTCCGGCGCCCTGGTGGAGCGGCTACAGCTGTGGTTGAACAACCCCAGCCTGCGTCCGCAAAGCCTGACCAT
TAACGGCACCGGCCTGACCTTGCAACCGAGTTTCATTGCCCTGGGGCATCACGATCAGCATCAGATCCTGGTCTTCCTCG
AAGACCTGGCCCAAGTGGCCCAACACGCCCAGCAGTTGAAACTCGCCTCCCTGGGGCGCCTCACCGCCGGTATCGCCCAT
GAAATCCGCAACCCGCTGGGAGCGATCAGCCATGCGGCGCAATTGCTGCGCGAGTCCGAGGAACTGAACAGCGCGGATCG
GCGTCTGACGCAGATCATCCAGGATCACTCCCAACGAATGAACCGCGTCATTGAAAACGTCCTGCAACTGTCCCGCCGCC
AGCAGACCACGCCGCAGCGCCTGGATCTGCGGATCTGGCTCGACCAGTTCGTCCGACAAGCCCGGGAAAACGCGGCTGGG
CATCAGCACTTGCACCTGAGCATCGACCCGGGTGACTACCTCACGCTGATGGACCCCGATCAGTTGACCCAGGTGCTCGA
CAACCTGCTGCGCAACGCCTGGCGTCACAGCGCGATGGCCCATGAAGAGGCCGAGGTCTGGCTGAAGCTGTTCATCGACC
CCCACAGCCAGCTGTCCACGCTGGACATTATCGACAACGGCCCCGGCGTGACACCGGACCAGCAAGCGCATTTGTTCGAA
CCTTTCTTCACCACCAGCAGCCAGGGCACCGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCG
CCTAGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACTTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(418-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(310-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.618

97.736

0.592