Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSH68_RS16700 Genome accession   NZ_CP117464
Coordinates   3697828..3700053 (-) Length   741 a.a.
NCBI ID   WP_186762507.1    Uniprot ID   -
Organism   Pseudomonas lurida strain FP1465     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3692828..3705053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH68_RS16665 (PSH68_16660) murB 3693210..3694229 (-) 1020 WP_034106772.1 UDP-N-acetylmuramate dehydrogenase -
  PSH68_RS16670 (PSH68_16665) - 3694226..3694690 (-) 465 WP_034106774.1 low molecular weight protein-tyrosine-phosphatase -
  PSH68_RS16675 (PSH68_16670) kdsB 3694690..3695454 (-) 765 WP_034106776.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH68_RS16680 (PSH68_16675) - 3695451..3695636 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH68_RS16685 (PSH68_16680) lpxK 3695661..3696671 (-) 1011 WP_034106778.1 tetraacyldisaccharide 4'-kinase -
  PSH68_RS16690 (PSH68_16685) - 3696671..3697099 (-) 429 WP_034106779.1 biopolymer transporter ExbD -
  PSH68_RS16695 (PSH68_16690) exbB 3697096..3697731 (-) 636 WP_012724911.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH68_RS16700 (PSH68_16695) comA 3697828..3700053 (-) 2226 WP_186762507.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH68_RS16705 (PSH68_16700) - 3700189..3700704 (+) 516 WP_034106781.1 DUF2062 domain-containing protein -
  PSH68_RS16710 (PSH68_16705) - 3700701..3702071 (-) 1371 WP_305433578.1 sensor histidine kinase -
  PSH68_RS16715 (PSH68_16710) - 3702058..3702786 (-) 729 WP_034106783.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80303.37 Da        Isoelectric Point: 10.9345

>NTDB_id=785805 PSH68_RS16700 WP_186762507.1 3697828..3700053(-) (comA) [Pseudomonas lurida strain FP1465]
MRTGMVALALGLLSLRFLPALPATGWLIALLVLALMLLPFRTYPLAFFLLGLSWACVSAQWALDDRLRPALDGQTRWVEG
RVTGLPQQTGQGVRFVLTDSRSRNARLPKRIRVSWRGGPPVRSGERWRLAITLKQPAGLLNFHGFDQEAWLLAQRIGATG
SVKDGERLAPAHNAWRDSVRQRLMAVDAQGREAGLTALVLGDGSGLAAADWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IAGLARYGCWPRTWPWLPWACGLAFSAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGLWWPLLLALNGVLVLEPL
ASLQPGFWLSFAAVAVLILAFGGRLGPWSLWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPFANLVAVPWISLVVLPLAL
LGTALLPLPFVGEGLLWLAGGALEGLFEGLAWLAAQVPAWIPAEVPMGYWLVSLFGAVLLLLPKGVPFRVLGWPMLMLAV
FAPRELVPHGQVDVVQLDVGQGQALILRTRHHALLYDAGPRSGTFDLGARVVLPSLRKLGVGALDLMLLSHADADHAGGA
TAIAKGLPIKRVVGGETEGLPALLGTQPCISGERWTWDGVTFELWQWPGAITGNPKSCVLQVQANGERLLLTGDIDRAAE
QAMLGSPLAVPTHWLQAPHHGSRSSSSWAFLERLAPQSVLISRGRGNAFGHPHPQVMARYQRLGSQVYDSAEHGAVRLQL
GAFAPPVVARSQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=785805 PSH68_RS16700 WP_186762507.1 3697828..3700053(-) (comA) [Pseudomonas lurida strain FP1465]
ATGAGGACAGGGATGGTCGCGCTGGCGCTGGGGTTGCTGAGCCTGCGCTTTTTACCGGCATTGCCGGCTACCGGCTGGCT
GATCGCCTTATTGGTGCTGGCATTGATGCTGTTGCCGTTTCGCACTTACCCGTTGGCGTTTTTCCTGCTGGGGCTGAGTT
GGGCCTGCGTCAGCGCGCAGTGGGCGTTGGATGATCGCCTGAGGCCGGCACTGGATGGCCAGACACGTTGGGTGGAAGGG
CGGGTCACCGGGCTGCCGCAACAGACGGGTCAGGGCGTGCGTTTTGTCCTGACCGACAGCCGGTCGCGCAATGCCCGGTT
GCCCAAACGCATCCGGGTGTCCTGGCGAGGCGGGCCACCGGTCCGCAGTGGTGAGCGCTGGCGCCTGGCAATCACCCTCA
AGCAACCGGCCGGGCTGTTGAATTTTCACGGATTTGACCAGGAAGCCTGGCTGCTGGCCCAGCGCATCGGCGCCACCGGC
TCGGTGAAGGACGGCGAGCGCCTGGCACCGGCCCACAACGCCTGGCGCGACAGTGTGCGCCAGCGCCTGATGGCGGTGGA
TGCCCAGGGCCGGGAAGCCGGCCTGACTGCCCTGGTGCTGGGGGATGGCTCCGGGTTGGCCGCTGCCGATTGGCAGGTGT
TGCAGGACACGGGCACCGTGCATCTGCTGGTCATCTCCGGCCAACACATCGGTTTGTTGGCGGGCTTGATCTATGGGTTG
ATCGCCGGGCTGGCGCGCTACGGCTGCTGGCCCCGAACCTGGCCGTGGCTGCCATGGGCGTGTGGCCTGGCATTCAGCGC
CGCGCTGGGCTACGGCTTGCTGGCAGGGTTTGGCGTGCCGGTGCAGCGTGCCTGCGTGATGGTCGGCCTGGTGTTGTTGT
GGCGGTTGCGCTTCCGGCATCTGGGGCTCTGGTGGCCGCTGCTGCTGGCACTCAATGGGGTGCTGGTCCTGGAACCCTTG
GCCAGCCTGCAGCCGGGCTTCTGGCTGTCGTTTGCGGCGGTAGCGGTATTGATCCTGGCGTTCGGTGGACGACTGGGGCC
ATGGAGCCTGTGGCAGGCGTGGACCCGGCCGCAGTGGTTGATTGCCATTGGGTTGTTTCCGGTGTTGCTGGTGCTGGGGC
TGCCTATCAGCCTGAGCGCGCCGTTCGCTAACCTGGTCGCGGTGCCGTGGATCAGCCTGGTGGTGTTGCCACTGGCGTTG
CTGGGGACGGCGTTGCTGCCGTTGCCGTTTGTGGGGGAAGGATTGCTCTGGCTGGCGGGCGGTGCGCTGGAGGGTTTGTT
CGAGGGCTTGGCGTGGCTGGCCGCGCAGGTGCCGGCCTGGATCCCGGCCGAAGTGCCGATGGGCTATTGGTTGGTGAGCC
TGTTCGGTGCCGTGTTGCTCCTGCTGCCCAAGGGCGTGCCGTTTCGCGTGCTGGGCTGGCCGATGCTGATGCTGGCCGTG
TTTGCGCCACGCGAACTGGTTCCCCATGGCCAGGTAGACGTGGTGCAATTGGATGTAGGGCAGGGGCAGGCGTTGATCTT
GCGTACCCGTCACCATGCCTTGCTGTATGACGCCGGCCCGCGCTCCGGAACCTTTGACCTGGGCGCGCGCGTGGTGCTGC
CGTCGCTGCGAAAACTTGGGGTAGGGGCCTTGGACCTGATGCTGCTCAGCCATGCCGACGCCGATCATGCCGGCGGCGCG
ACGGCGATAGCCAAGGGCCTGCCGATCAAACGCGTGGTGGGCGGGGAAACCGAGGGTCTGCCGGCGCTGCTCGGCACCCA
GCCGTGCATTAGTGGCGAACGCTGGACCTGGGACGGTGTAACGTTCGAACTCTGGCAATGGCCTGGTGCTATCACCGGTA
ACCCGAAGTCCTGCGTGTTGCAGGTGCAGGCCAATGGCGAGCGCCTGTTGCTGACCGGTGACATTGACCGTGCCGCCGAA
CAGGCCATGCTCGGTTCACCGCTGGCGGTGCCCACTCATTGGTTGCAGGCGCCACACCATGGCAGTCGCAGTTCTTCATC
CTGGGCGTTCCTGGAGCGCCTTGCCCCGCAGTCCGTGCTTATTTCACGGGGGCGGGGCAATGCGTTCGGCCATCCCCATC
CGCAGGTGATGGCGCGTTACCAGCGGTTGGGCAGCCAGGTGTATGACAGTGCCGAGCACGGGGCCGTGCGCCTGCAACTC
GGGGCTTTCGCGCCGCCGGTTGTTGCGCGCAGTCAACGCAGGTTCTGGCGCGAGCGGTTACCGTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-671)

Competence protein (Competence)

(198-462)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.833

97.166

0.591
  comA Ralstonia pseudosolanacearum GMI1000

35.206

100

0.381