Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH68_RS16695 Genome accession   NZ_CP117464
Coordinates   3697096..3697731 (-) Length   211 a.a.
NCBI ID   WP_012724911.1    Uniprot ID   A0A855QI08
Organism   Pseudomonas lurida strain FP1465     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3692096..3702731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH68_RS16660 (PSH68_16655) - 3692457..3693128 (+) 672 WP_003174664.1 Bax inhibitor-1/YccA family protein -
  PSH68_RS16665 (PSH68_16660) murB 3693210..3694229 (-) 1020 WP_034106772.1 UDP-N-acetylmuramate dehydrogenase -
  PSH68_RS16670 (PSH68_16665) - 3694226..3694690 (-) 465 WP_034106774.1 low molecular weight protein-tyrosine-phosphatase -
  PSH68_RS16675 (PSH68_16670) kdsB 3694690..3695454 (-) 765 WP_034106776.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH68_RS16680 (PSH68_16675) - 3695451..3695636 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH68_RS16685 (PSH68_16680) lpxK 3695661..3696671 (-) 1011 WP_034106778.1 tetraacyldisaccharide 4'-kinase -
  PSH68_RS16690 (PSH68_16685) - 3696671..3697099 (-) 429 WP_034106779.1 biopolymer transporter ExbD -
  PSH68_RS16695 (PSH68_16690) exbB 3697096..3697731 (-) 636 WP_012724911.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH68_RS16700 (PSH68_16695) comA 3697828..3700053 (-) 2226 WP_186762507.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH68_RS16705 (PSH68_16700) - 3700189..3700704 (+) 516 WP_034106781.1 DUF2062 domain-containing protein -
  PSH68_RS16710 (PSH68_16705) - 3700701..3702071 (-) 1371 WP_305433578.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22875.02 Da        Isoelectric Point: 7.3613

>NTDB_id=785804 PSH68_RS16695 WP_012724911.1 3697096..3697731(-) (exbB) [Pseudomonas lurida strain FP1465]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWSWIKNKQLDKDKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=785804 PSH68_RS16695 WP_012724911.1 3697096..3697731(-) (exbB) [Pseudomonas lurida strain FP1465]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGCTCTATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGGCAGGTCTGGAGCTGGATCAAGAACA
AGCAACTGGACAAGGACAAACTCAAGGAACTGCGCGCCAACTCCCCGCTGGGTGAAATCCTTGCTGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAAGCCGCCGCCCGCGTCATCCATGAACTGGAGCGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCATTGCTCGGCTTGCTGGGCACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCGGCGGTGTTGGCCGGGGGGATCTCCAAGGCGCTGATCACCACGGCG
GCGGGCCTGATGGTGGGTATTCCTTCGGTGTTCTTCCACCGTTTCCTGCAGCGTCGCATTGATGAACTGGTGGTGGGCAT
GGAACAGGAAGCCATCAAGTTGGTGGAAGTGGTACAGGGCGACCGTGACGTGGACCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A855QI08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848