Detailed information NTG0785735

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PSH69_RS25625
• Genome accession: NZ_CP117461
• Coordinates: 5706727..5708073 (+)
• Length: 448 a.a.
• NCBI ID: WP_018925897.1
• Uniprot ID: -
• Organism: Pseudomonas sp. FP1740
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5701727..5713073

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH69_RS25600 (PSH69_25590)	pgeF	5701932..5702654 (-)	723	WP_305410183.1	peptidoglycan editing factor PgeF	-
PSH69_RS25605 (PSH69_25595)	rluD	5702651..5703613 (-)	963	WP_007901932.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PSH69_RS25610 (PSH69_25600)	-	5703765..5704781 (+)	1017	WP_018925899.1	outer membrane protein assembly factor BamD	-
PSH69_RS25615 (PSH69_25605)	-	5704918..5705151 (+)	234	WP_007938406.1	PP0621 family protein	-
PSH69_RS25620 (PSH69_25610)	pilS	5705141..5706730 (+)	1590	WP_305410184.1	ATP-binding protein	Regulator
PSH69_RS25625 (PSH69_25615)	pilR	5706727..5708073 (+)	1347	WP_018925897.1	sigma-54 dependent transcriptional regulator	Regulator
PSH69_RS25630 (PSH69_25620)	thiO	5708093..5709193 (-)	1101	WP_305410185.1	glycine oxidase ThiO	-
PSH69_RS25635 (PSH69_25625)	-	5709250..5709651 (-)	402	WP_019581258.1	type IV pilin protein	-
PSH69_RS25640 (PSH69_25630)	-	5709665..5712787 (-)	3123	WP_305410186.1	pilus assembly protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49904.31 Da
• Isoelectric Point: 7.0909

>NTDB_id=785735 PSH69_RS25625 WP_018925897.1 5706727..5708073(+) (pilR) [Pseudomonas sp. FP1740]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLAEAQALLARDTFDLCLTDMRLPDGTGLALVQHIQQRYAQVP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVISALSLPAPGGTSSGIDRRLLGDSLPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHDQGPRASRPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRSIGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIELLT
NNMLKRLAASTGQPPAKLHPQALEALKNYRFPGNVRELENMLERAHTLCENKQIEASDLRLAEGNCNPDGGVPDLTQIDN
LEAYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=785735 PSH69_RS25625 WP_018925897.1 5706727..5708073(+) (pilR) [Pseudomonas sp. FP1740]
TTGAACACAAGCCCACGGCAAAAAATCCTGATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCCCGCAACCTCGCAGAAGCGCAGGCGCTACTGGCACGGGATACGTTCGACCTGT
GCCTGACCGACATGCGCCTGCCTGACGGCACCGGTCTGGCGCTGGTGCAGCACATCCAGCAGCGCTATGCGCAAGTGCCG
GTGGCGATGATCACCGCCTACGGCAGCCTGGAGACAGCAATAAATGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTCACCCGCCTGCGCGAACTGGTCATCAGCGCCCTGAGCTTGCCAGCGCCAGGCGGCACCAGCAGCGGCA
TCGACCGTCGGCTGCTGGGAGACTCGCTGCCCATGCGCAACCTGCGCAAACAAATCGACAAACTGGCCCGCAGCCAAGCC
CCGGTCTACATCAGTGGCGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGACTTATCCACGACCAAGGCCCACGCGCCAG
CCGACCGTTCGTCCCGGTGAACTGTGGGGCAATCCCGTCGGAATTGATGGAAAGCGAATTTTTCGGCCATCGCAAAGGCA
GTTTCAGCGGCGCCATCGAAGACAAGCCCGGGCTGTTCCAGGCAGCCCACGGCGGTACTTTGTTCCTTGACGAAGTGGCT
GACCTACCGCTGGCAATGCAGGTCAAACTGCTGCGGGCCATACAGGAGAAAGCCGTTCGCAGCATCGGTGGCCAGCAGGA
AACCGTGGTCGATGTGCGCATCCTCTGCGCCACTCACAAAGACCTCGATGCCGAAGTCGCCGCCGAACGCTTTCGCCAGG
ACTTGTACTACCGCCTGAACGTGATCGAGCTGCGAGTACCGTCCTTGCGCGAACGGCGCGACGACATTGAGCTTCTGACC
AACAATATGCTCAAGCGACTGGCGGCCAGCACTGGCCAGCCCCCCGCAAAACTCCACCCACAAGCCCTCGAAGCGCTGAA
AAACTATCGCTTTCCTGGAAACGTGCGGGAATTGGAGAACATGCTCGAACGGGCTCACACCTTGTGCGAGAACAAACAGA
TCGAAGCCAGCGACCTGCGCCTGGCGGAAGGCAACTGCAATCCGGACGGCGGCGTGCCAGACCTGACACAGATCGACAAT
CTGGAAGCCTATCTGGAAAACGTCGAACGCAAACTCATCCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACGGCGGC
GGCCCAGCGATTGAATCTGTCATTTCGGTCGATGCGCTACAGGCTGAAGAAATTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Response regulator receiver domain (Response_reg) (9-118)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.007	98.884	0.781
pilR	Acinetobacter baumannii strain A118	48.802	100	0.5