Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PSH69_RS25620 Genome accession   NZ_CP117461
Coordinates   5705141..5706730 (+) Length   529 a.a.
NCBI ID   WP_305410184.1    Uniprot ID   -
Organism   Pseudomonas sp. FP1740     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5700141..5711730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH69_RS25600 (PSH69_25590) pgeF 5701932..5702654 (-) 723 WP_305410183.1 peptidoglycan editing factor PgeF -
  PSH69_RS25605 (PSH69_25595) rluD 5702651..5703613 (-) 963 WP_007901932.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSH69_RS25610 (PSH69_25600) - 5703765..5704781 (+) 1017 WP_018925899.1 outer membrane protein assembly factor BamD -
  PSH69_RS25615 (PSH69_25605) - 5704918..5705151 (+) 234 WP_007938406.1 PP0621 family protein -
  PSH69_RS25620 (PSH69_25610) pilS 5705141..5706730 (+) 1590 WP_305410184.1 ATP-binding protein Regulator
  PSH69_RS25625 (PSH69_25615) pilR 5706727..5708073 (+) 1347 WP_018925897.1 sigma-54 dependent transcriptional regulator Regulator
  PSH69_RS25630 (PSH69_25620) thiO 5708093..5709193 (-) 1101 WP_305410185.1 glycine oxidase ThiO -
  PSH69_RS25635 (PSH69_25625) - 5709250..5709651 (-) 402 WP_019581258.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58702.51 Da        Isoelectric Point: 6.9041

>NTDB_id=785734 PSH69_RS25620 WP_305410184.1 5705141..5706730(+) (pilS) [Pseudomonas sp. FP1740]
MIAETPSPGNKQAQRLLRLYHLYRLSVGITLVLLISSNMDNQLLKFANDDLLRNGSWLYLVLNILLVVFLGNTRRPAQLF
GLALVDVLLLCGLFYAAGGMASAIGNLLIVSVAISNTLLRGRVGLLIAAVGALGIVGLSFILSFNHPASPSDYLQIGTLG
ALCFAAALLVQGLTRRLEVSENLAEQRASEVLSLEALNALILQRMRTGILVLDDQRRVQLANHSALTLLGQEKLDGQLID
DYSIPLVERLQLWLNNPTLRPQSLQIASNGLELQPSFIALDQSPHHQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLQESEELNGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTVPQRLDLKPWLEHFVAETREGSKEH
QQIHLRIGSGDFKTLMDPDQLTQILDNLLRNAWRHSALKHDRAQAWLELFVDPDSQLPTLEVLDDGPGVDPDQRTHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=785734 PSH69_RS25620 WP_305410184.1 5705141..5706730(+) (pilS) [Pseudomonas sp. FP1740]
GTGATCGCTGAGACGCCCAGCCCAGGCAACAAACAGGCCCAGCGACTGCTGCGCCTCTATCACCTCTACCGCTTAAGCGT
CGGCATCACCCTGGTACTGTTGATCTCCAGCAACATGGACAACCAGTTGCTGAAGTTCGCCAATGACGACCTGCTGCGCA
ACGGCAGCTGGTTGTACCTGGTGCTGAATATCCTGCTGGTGGTCTTTCTGGGGAACACCCGACGCCCCGCGCAGCTGTTC
GGCCTGGCGCTGGTCGATGTCCTGCTGCTGTGCGGCCTGTTCTATGCCGCAGGCGGCATGGCCAGCGCCATTGGCAATTT
GCTGATCGTCTCAGTGGCCATCAGCAATACCTTGCTGCGCGGGCGTGTCGGTCTGCTGATCGCAGCGGTCGGTGCCCTTG
GCATCGTGGGGTTGAGCTTCATCCTGAGCTTCAACCACCCCGCCAGCCCCAGTGATTACCTGCAAATCGGTACCCTCGGC
GCCCTGTGTTTTGCCGCGGCGCTGCTGGTGCAGGGCTTGACCCGACGACTGGAAGTCAGCGAGAACCTGGCCGAGCAGCG
GGCCAGCGAAGTGCTCAGCCTGGAAGCGCTCAACGCACTGATTCTGCAACGCATGCGCACGGGCATTCTGGTGCTCGACG
ACCAGCGGCGGGTGCAACTGGCCAATCACAGCGCCTTGACCTTGCTGGGGCAGGAAAAACTGGACGGCCAGTTGATCGAC
GATTACTCGATACCGTTGGTTGAGCGGCTCCAACTGTGGCTCAACAATCCAACGTTGCGCCCGCAAAGCCTGCAGATCGC
CAGCAACGGCCTCGAGCTGCAACCAAGCTTCATTGCCCTTGACCAAAGCCCGCACCACCAGACGCTGGTTTTTCTCGAAG
ACCTCGCCCAAATCGCCCAACAGGCCCAACAACTGAAACTCGCGGCCTTAGGTCGCCTGACTGCCGGGATTGCCCATGAG
ATCCGCAATCCACTGGGCGCCATTAGTCATGCCGCGCAGTTACTGCAGGAATCCGAGGAACTGAACGGTGCGGACCGGCG
TCTGACCCAGATTATTCAAGACCACTCTCAGCGCATGAATCGGGTAATCGAAAACGTCCTGCAACTGTCCCGTCGTCAGC
AAACCGTGCCGCAACGGCTCGATTTGAAGCCGTGGCTGGAGCATTTCGTCGCCGAAACCCGCGAAGGCTCGAAAGAACAT
CAGCAGATTCACCTGCGCATCGGTTCGGGAGACTTCAAAACCCTGATGGATCCGGATCAGCTGACCCAGATTCTCGATAA
CCTATTGCGCAATGCCTGGCGCCATAGCGCCCTCAAGCATGATCGGGCGCAGGCCTGGCTTGAGTTGTTTGTCGACCCCG
ACAGCCAGTTGCCGACCCTGGAAGTCCTGGACGATGGCCCCGGCGTCGATCCGGACCAGCGCACGCACTTGTTCGAACCG
TTCTTCACCACCAGCAGCCAGGGTACTGGCCTGGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAATCAAGCCCGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.811

100

0.599