Detailed information NTG0785725

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PSH69_RS22360
• Genome accession: NZ_CP117461
• Coordinates: 5010010..5012244 (-)
• Length: 744 a.a.
• NCBI ID: WP_305409858.1
• Uniprot ID: -
• Organism: Pseudomonas sp. FP1740
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5005010..5017244

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH69_RS22325 (PSH69_22315)	murB	5005390..5006409 (-)	1020	WP_305409856.1	UDP-N-acetylmuramate dehydrogenase	-
PSH69_RS22330 (PSH69_22320)	-	5006406..5006870 (-)	465	WP_105342969.1	low molecular weight protein-tyrosine-phosphatase	-
PSH69_RS22335 (PSH69_22325)	kdsB	5006870..5007634 (-)	765	WP_018926233.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PSH69_RS22340 (PSH69_22330)	-	5007631..5007816 (-)	186	WP_003179363.1	Trm112 family protein	-
PSH69_RS22345 (PSH69_22335)	lpxK	5007842..5008852 (-)	1011	WP_305409857.1	tetraacyldisaccharide 4'-kinase	-
PSH69_RS22350 (PSH69_22340)	-	5008852..5009280 (-)	429	WP_105342963.1	biopolymer transporter ExbD	-
PSH69_RS22355 (PSH69_22345)	exbB	5009277..5009912 (-)	636	WP_162556235.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PSH69_RS22360 (PSH69_22350)	comA	5010010..5012244 (-)	2235	WP_305409858.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PSH69_RS22365 (PSH69_22355)	-	5012381..5012902 (+)	522	WP_018926237.1	DUF2062 domain-containing protein	-
PSH69_RS22370 (PSH69_22360)	-	5012974..5013753 (-)	780	WP_018926238.1	ABC transporter permease	-
PSH69_RS22375 (PSH69_22365)	-	5013750..5014682 (-)	933	WP_305409859.1	ABC transporter ATP-binding protein	-
PSH69_RS22380 (PSH69_22370)	-	5014816..5015439 (-)	624	WP_305409860.1	glutathione S-transferase family protein	-
PSH69_RS22385 (PSH69_22375)	-	5015483..5016142 (-)	660	WP_305409861.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81466.52 Da
• Isoelectric Point: 9.5893

>NTDB_id=785725 PSH69_RS22360 WP_305409858.1 5010010..5012244(-) (comA) [Pseudomonas sp. FP1740]
MRTGMMALALGLLALRFLPALPPAGLWLLLPVVGLMLLPFRTFPLAFWLFGFSWACANAQWALDDRLALKLDGETRWVEG
RVTGLPQQAEGVVRFELTDSQSRRTQLPRHLRLAWYGGPPVNSGEQWRLAVKLKRPAGLLNPHGFDYDAWLLAQRIGATG
TVKDGQRLGQAQWAWRDGIRQRLQAVDAQGRTGALTALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
IAGLARYGLWPRRLPWLPWACGLAFAAALGYGLLAGFEVPVRRACLMIGLLLLWRLRFRHLGAWWPLLLALDGVLLLDPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPLLLVLGLPISLSGPLANLLAVPWISLMVLPPAL
LGTLLLAVPFVGEGLLWLAGGLIDLLFKGLALVAGQLPAWVPVAVPLWVWAFGALGAFLLLLPPGVPLRPLGWPMLLLLV
FAPRHTLPEGVAEIWQLDVGQGLAILVRTRHHTLLYDAGPRFGDIDLGERVVLPTLRKLGVNGLDLMLISHADADHAGGA
RAIASGVPVTRVLSGDPLALPDELHAEGCESGQQWTWDDVRFQLWQWSSASDSNQKSCVLQIEANGERLLLTGDIDTAAE
QVLLDGPLAVPTDWLQAPHHGSRSSSSMALLSALQPKAVLISRGNGNSFGHPHPTVVARYQKRGMAIYDSAGQGAIRLQL
GRFEPPWTMLQERRFWRDRPSLSQ

Nucleotide

• Length: 2235 bp

>NTDB_id=785725 PSH69_RS22360 WP_305409858.1 5010010..5012244(-) (comA) [Pseudomonas sp. FP1740]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGTCTGCTGGCCCTGCGTTTTTTGCCGGCACTGCCGCCGGCAGGGTTGTG
GCTGTTGTTGCCGGTAGTGGGTTTGATGTTGCTGCCGTTTCGAACCTTTCCACTGGCATTTTGGTTGTTCGGTTTCAGTT
GGGCGTGTGCGAATGCGCAGTGGGCGCTGGATGATCGCCTGGCGCTGAAGCTCGATGGCGAGACTCGCTGGGTCGAAGGC
CGGGTTACCGGGTTGCCGCAACAGGCCGAGGGTGTGGTGCGTTTCGAGCTGACGGACAGTCAGTCGCGTCGCACCCAACT
GCCTCGGCACCTGCGTCTGGCCTGGTATGGCGGGCCGCCCGTCAACAGTGGCGAGCAGTGGCGGCTGGCAGTCAAATTGA
AGCGTCCTGCCGGGCTGCTCAACCCCCATGGTTTTGATTACGACGCCTGGTTGCTGGCCCAACGTATTGGCGCCACTGGG
ACCGTCAAGGACGGTCAGCGACTGGGGCAAGCGCAGTGGGCCTGGCGCGACGGCATTCGTCAGCGTTTGCAGGCCGTGGA
TGCGCAGGGGCGAACGGGGGCGCTGACGGCGTTGGTGCTGGGGGATGGCGCCGGGCTCAGCCGTGAGGACTGGCAGGTGC
TGCAAGACACCGGCACCGTGCATCTGTTGGTGATTTCCGGGCAGCACATTGGTTTGCTGGCGGGGCTGGTGTATCTGCTG
ATCGCCGGGCTGGCGCGCTATGGCTTATGGCCCAGGCGCTTGCCGTGGCTGCCATGGGCGTGTGGGCTGGCGTTCGCGGC
GGCGCTCGGTTATGGGCTGCTGGCCGGTTTCGAGGTGCCGGTGCGTCGGGCCTGCCTGATGATTGGTTTGCTGTTGTTGT
GGCGGCTACGGTTTCGTCACCTCGGCGCCTGGTGGCCGCTGTTGCTGGCGCTTGACGGTGTTTTGCTGCTGGACCCGCTG
GCAAGCCTGCAACCGGGTTTCTGGTTGTCCTTTGCGGCAGTAGCGGTGCTGATTTTCACCTTTGGCGGGCGATTGGGCCC
GTGGCGTTGGTGGCAAACCTGGACCCGTGCCCAATGGCTGATCGCAATCGGCCTGTGCCCGCTGCTGTTGGTGCTGGGGT
TGCCGATCAGTCTCAGCGGGCCGCTGGCCAATCTTCTGGCGGTGCCCTGGATCAGTCTGATGGTCTTGCCGCCGGCCTTG
CTCGGAACGCTGCTGTTGGCCGTTCCTTTTGTGGGCGAGGGGTTACTGTGGTTGGCTGGCGGTCTGATCGACCTTTTGTT
CAAGGGGCTGGCGTTGGTGGCCGGGCAATTGCCCGCGTGGGTGCCGGTGGCGGTTCCGTTGTGGGTTTGGGCGTTCGGCG
CGCTGGGCGCATTTCTGCTGTTACTGCCACCGGGCGTGCCGTTGCGCCCACTGGGCTGGCCGATGTTGCTGTTGCTGGTT
TTTGCGCCCCGGCACACGCTGCCTGAAGGCGTCGCCGAAATCTGGCAACTGGATGTCGGCCAGGGGTTGGCCATTCTGGT
GCGCACCCGCCATCACACGCTGCTGTATGACGCCGGGCCACGGTTCGGTGATATCGACCTGGGTGAGCGGGTGGTGTTGC
CAACATTGCGCAAACTGGGGGTGAATGGACTTGATTTGATGCTGATCAGCCATGCCGACGCCGATCACGCCGGCGGTGCG
CGAGCGATTGCCAGCGGTGTGCCGGTGACTCGGGTACTGAGTGGCGACCCACTGGCCCTGCCGGACGAGCTACATGCCGA
GGGCTGCGAGAGCGGTCAACAGTGGACCTGGGACGACGTGCGGTTCCAGCTCTGGCAGTGGTCGTCGGCCAGCGACAGCA
ATCAGAAATCCTGCGTGCTGCAGATCGAAGCCAACGGCGAGCGGTTGCTGCTGACCGGCGATATCGATACCGCGGCCGAG
CAGGTGCTGCTCGACGGTCCATTGGCGGTGCCGACGGACTGGTTGCAGGCCCCGCACCACGGCAGTCGCAGTTCATCTTC
GATGGCGTTGCTCAGCGCTCTGCAGCCTAAAGCGGTGCTGATTTCCCGTGGCAACGGTAACTCTTTCGGTCATCCCCATC
CCACAGTGGTGGCGCGCTATCAAAAGCGTGGCATGGCGATCTACGACAGCGCCGGGCAGGGTGCCATTCGTCTACAACTG
GGGCGCTTCGAACCGCCCTGGACGATGCTTCAGGAACGGCGTTTCTGGCGCGATCGGCCATCATTGAGCCAGTAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Competence protein (Competence) (198-463)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.194	96.774	0.612
comA	Ralstonia pseudosolanacearum GMI1000	33.333	100	0.374