Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH69_RS22355 Genome accession   NZ_CP117461
Coordinates   5009277..5009912 (-) Length   211 a.a.
NCBI ID   WP_162556235.1    Uniprot ID   -
Organism   Pseudomonas sp. FP1740     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5004277..5014912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH69_RS22320 (PSH69_22310) - 5004676..5005146 (-) 471 WP_019582720.1 (2Fe-2S)-binding protein -
  PSH69_RS22325 (PSH69_22315) murB 5005390..5006409 (-) 1020 WP_305409856.1 UDP-N-acetylmuramate dehydrogenase -
  PSH69_RS22330 (PSH69_22320) - 5006406..5006870 (-) 465 WP_105342969.1 low molecular weight protein-tyrosine-phosphatase -
  PSH69_RS22335 (PSH69_22325) kdsB 5006870..5007634 (-) 765 WP_018926233.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH69_RS22340 (PSH69_22330) - 5007631..5007816 (-) 186 WP_003179363.1 Trm112 family protein -
  PSH69_RS22345 (PSH69_22335) lpxK 5007842..5008852 (-) 1011 WP_305409857.1 tetraacyldisaccharide 4'-kinase -
  PSH69_RS22350 (PSH69_22340) - 5008852..5009280 (-) 429 WP_105342963.1 biopolymer transporter ExbD -
  PSH69_RS22355 (PSH69_22345) exbB 5009277..5009912 (-) 636 WP_162556235.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH69_RS22360 (PSH69_22350) comA 5010010..5012244 (-) 2235 WP_305409858.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH69_RS22365 (PSH69_22355) - 5012381..5012902 (+) 522 WP_018926237.1 DUF2062 domain-containing protein -
  PSH69_RS22370 (PSH69_22360) - 5012974..5013753 (-) 780 WP_018926238.1 ABC transporter permease -
  PSH69_RS22375 (PSH69_22365) - 5013750..5014682 (-) 933 WP_305409859.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22897.12 Da        Isoelectric Point: 6.8770

>NTDB_id=785724 PSH69_RS22355 WP_162556235.1 5009277..5009912(-) (exbB) [Pseudomonas sp. FP1740]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMGTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=785724 PSH69_RS22355 WP_162556235.1 5009277..5009912(-) (exbB) [Pseudomonas sp. FP1740]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGTCTCTGGACCCTGCGCGCCAGCCGCGTGACCCCGGAGCACTTGCTCGGGCAGGTGTGGGTCTGGATCAAGGACA
AACAACTCAATAAAGAAAAACTCAAGGAACTGCGCGCCAACTCCCCCCTGGGCGAGATCCTGGCTGCCGGTCTGGCGAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTGATTCATGAGCTCGAACGTTACAT
CAACGCCCTGGGCACCATCGCCGCCATGGCTCCGTTGCTGGGGCTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GTGCGTTCATGGGCACGGGCATGGGCACCAACGCCGCGGTGCTGGCCGGGGGTATTTCCAAGGCGCTGATCACCACCGCC
GCGGGCCTGATGGTCGGTATCCCGGCCGTGTTCTTCCACCGCTTCCTGCAACGTCGGATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAAGTGGTACAGGGCGATCGCGACGTGGACCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858