Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSH77_RS17285 Genome accession   NZ_CP117459
Coordinates   3835852..3838077 (-) Length   741 a.a.
NCBI ID   WP_305429121.1    Uniprot ID   -
Organism   Pseudomonas extremorientalis strain FP1754     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3830852..3843077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH77_RS17250 (PSH77_17240) murB 3831247..3832266 (-) 1020 WP_092245147.1 UDP-N-acetylmuramate dehydrogenase -
  PSH77_RS17255 (PSH77_17245) - 3832263..3832727 (-) 465 WP_071491863.1 low molecular weight protein-tyrosine-phosphatase -
  PSH77_RS17260 (PSH77_17250) kdsB 3832727..3833491 (-) 765 WP_222541573.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH77_RS17265 (PSH77_17255) - 3833488..3833673 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH77_RS17270 (PSH77_17260) lpxK 3833698..3834708 (-) 1011 WP_305429118.1 tetraacyldisaccharide 4'-kinase -
  PSH77_RS17275 (PSH77_17265) - 3834708..3835136 (-) 429 WP_058425436.1 biopolymer transporter ExbD -
  PSH77_RS17280 (PSH77_17270) exbB 3835133..3835768 (-) 636 WP_058425437.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH77_RS17285 (PSH77_17275) comA 3835852..3838077 (-) 2226 WP_305429121.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH77_RS17290 (PSH77_17280) - 3838213..3838728 (+) 516 WP_071491867.1 DUF2062 domain-containing protein -
  PSH77_RS17295 (PSH77_17285) - 3838725..3840095 (-) 1371 WP_305429122.1 sensor histidine kinase -
  PSH77_RS17300 (PSH77_17290) - 3840082..3840810 (-) 729 WP_222541569.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80735.88 Da        Isoelectric Point: 10.9243

>NTDB_id=785671 PSH77_RS17285 WP_305429121.1 3835852..3838077(-) (comA) [Pseudomonas extremorientalis strain FP1754]
MKTGMCAFALGLLALRFLPALPPMGWLVAWPVLALMLLPFRTYPLAFFLLGLSWACLSAQWALDDRLMPALDGQTRWLEG
RVIGLPRQTGEGVRFELADSRSRNARLPKRIRVSWRGGPPVRSGERWRLAVTLKRPAGLLNFHGFDQEAWLLAQRIGATG
SVKDGERLAPARNAWRDSVRQRLLAVDAQGREAGLVALVLGDGSGLAAADWHVLQDTGTVHLLVISGQHIGLLAGLIYGL
IAGLARYGCWPRTWPWLPWACGLAFSAALGYGWLAGFGVPVQRACVMVGLVLLWRLRFRHLGLWWPLLLALNGVLVLEPL
ASLQPGFWLSFAAVAVLILAFGGRLGPWSLWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPLANLVAVPWISLVVLPLAL
SGTALLPLPFIGEGLLWLAGGALDGLFRGLAWLAGHMPAWIPAQVPLVYWLVSLLGAVLLLLPNGVPFRVLGWPMLLLAV
FPARELVPHGQMEVVQLDVGQGQSLILRTRHHALLYDAGPRTGTFDLGARVVLPSLRKLGVRALDLMLLSHADADHAGGA
AAIAKGIPIKRVVGGETDGLPAFIGTQPCVSGERWTWDGVTFELWQWPGAISGNAKSCVLQVQANGERLLLTGDIDREAE
QAMLASPLAVPTEWLQAPHHGSRSSSSWAFVERLSPRNVLISRGRGNAFGHPHPQVLERYQRLGSQVYDSAEQGAVRVQL
GAFAPPVVARSQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=785671 PSH77_RS17285 WP_305429121.1 3835852..3838077(-) (comA) [Pseudomonas extremorientalis strain FP1754]
ATGAAGACAGGGATGTGCGCGTTTGCGCTGGGGTTGCTGGCCCTGCGTTTTTTGCCGGCGTTGCCGCCTATGGGCTGGCT
GGTTGCCTGGCCGGTGCTGGCGTTGATGTTGTTGCCGTTTCGTACCTACCCACTGGCGTTTTTCCTGCTGGGGCTGAGTT
GGGCATGCCTCAGCGCACAGTGGGCGCTGGATGATCGTCTGATGCCTGCCCTGGATGGCCAGACGCGCTGGCTGGAGGGC
CGGGTGATCGGGTTGCCGCGACAGACGGGCGAAGGTGTGCGCTTCGAACTGGCCGATAGCCGGTCGCGCAATGCCCGCTT
ACCCAAACGCATCCGCGTGTCCTGGCGTGGCGGGCCGCCGGTGCGCAGCGGTGAACGTTGGCGCCTGGCGGTTACCCTCA
AACGTCCGGCCGGGTTGCTGAATTTCCACGGGTTTGATCAGGAAGCCTGGCTGTTGGCCCAACGCATCGGCGCCACGGGC
TCGGTCAAGGATGGCGAGCGCCTGGCGCCGGCCCGCAATGCCTGGCGCGACAGCGTGCGTCAGCGCCTGCTGGCGGTGGA
TGCCCAAGGCCGGGAAGCAGGCCTGGTTGCCCTGGTACTGGGCGACGGCTCAGGGTTGGCCGCTGCCGACTGGCACGTGT
TGCAGGACACGGGCACCGTGCATCTGCTGGTCATTTCCGGCCAGCACATCGGTTTGCTGGCGGGTTTGATCTATGGGCTG
ATCGCCGGGTTGGCCCGCTACGGTTGCTGGCCGCGAACCTGGCCGTGGTTGCCCTGGGCGTGTGGCCTGGCGTTCAGCGC
TGCGTTGGGCTACGGCTGGCTCGCAGGGTTTGGCGTGCCGGTGCAACGGGCTTGTGTGATGGTCGGGTTGGTGTTGTTGT
GGCGGCTGCGCTTCCGGCATCTGGGGCTGTGGTGGCCGTTGCTGCTGGCGCTCAATGGGGTGCTGGTGCTGGAGCCGTTG
GCCAGCTTGCAGCCCGGGTTCTGGTTGTCGTTTGCGGCGGTGGCGGTGCTGATTCTGGCGTTTGGTGGGCGGTTGGGGCC
GTGGAGCCTGTGGCAGGCATGGACCCGACCGCAGTGGCTGATTGCCATTGGGCTGTTTCCGGTGTTGTTGGTGTTGGGAC
TGCCCATCAGCCTGAGCGCACCGCTGGCCAACCTGGTGGCTGTGCCGTGGATCAGCCTGGTGGTGTTGCCGCTGGCGCTA
TCGGGGACCGCATTGCTGCCATTGCCATTTATTGGCGAAGGTCTTCTGTGGCTGGCAGGCGGCGCTCTGGATGGTTTGTT
CAGGGGGCTGGCGTGGCTCGCCGGACACATGCCGGCGTGGATCCCGGCGCAAGTACCATTGGTTTACTGGCTGGTGAGTC
TGCTGGGTGCCGTGTTGCTACTGCTGCCCAACGGCGTGCCGTTTCGCGTATTAGGCTGGCCAATGCTGTTGTTGGCAGTG
TTCCCTGCGCGAGAACTGGTGCCCCACGGGCAGATGGAGGTGGTGCAGTTGGACGTGGGGCAGGGGCAGTCGCTGATTCT
GCGCACGCGCCACCATGCATTGCTTTACGACGCCGGACCGCGCACCGGAACCTTTGATCTGGGCGCGCGGGTGGTGCTGC
CGTCGTTGCGAAAACTCGGGGTGAGGGCATTGGATCTGATGCTGCTCAGTCACGCCGATGCGGATCATGCCGGCGGCGCG
GCGGCGATTGCCAAGGGCATACCGATCAAGCGCGTGGTGGGCGGGGAAACCGATGGGTTGCCGGCATTTATCGGTACGCA
ACCTTGCGTCAGCGGCGAGCGATGGACCTGGGACGGGGTAACGTTCGAACTCTGGCAGTGGCCTGGCGCCATCAGTGGTA
ACGCAAAGTCCTGCGTGTTGCAGGTGCAGGCCAATGGCGAGCGCCTGTTGCTGACCGGCGACATCGACCGCGAAGCCGAA
CAGGCCATGCTCGCGTCGCCTCTGGCGGTGCCCACCGAGTGGCTGCAGGCGCCCCACCATGGCAGTCGCAGCTCTTCGTC
CTGGGCGTTTGTCGAGCGGCTCTCCCCCCGTAATGTGCTGATCTCGCGGGGGCGCGGCAATGCGTTCGGCCATCCCCATC
CGCAGGTGCTGGAACGTTACCAACGGCTGGGCAGCCAAGTGTATGACAGCGCCGAACAGGGCGCCGTGCGTGTGCAACTG
GGAGCATTCGCGCCACCGGTCGTTGCGCGCAGTCAACGCAGGTTCTGGCGCGAGCGCTTACCCTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-462)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-665)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.972

97.166

0.592
  comA Ralstonia pseudosolanacearum GMI1000

35.634

100

0.383