Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH77_RS17280 Genome accession   NZ_CP117459
Coordinates   3835133..3835768 (-) Length   211 a.a.
NCBI ID   WP_058425437.1    Uniprot ID   A0A1H0L153
Organism   Pseudomonas extremorientalis strain FP1754     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3830133..3840768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH77_RS17245 (PSH77_17235) - 3830513..3831184 (+) 672 WP_071491861.1 Bax inhibitor-1/YccA family protein -
  PSH77_RS17250 (PSH77_17240) murB 3831247..3832266 (-) 1020 WP_092245147.1 UDP-N-acetylmuramate dehydrogenase -
  PSH77_RS17255 (PSH77_17245) - 3832263..3832727 (-) 465 WP_071491863.1 low molecular weight protein-tyrosine-phosphatase -
  PSH77_RS17260 (PSH77_17250) kdsB 3832727..3833491 (-) 765 WP_222541573.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH77_RS17265 (PSH77_17255) - 3833488..3833673 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH77_RS17270 (PSH77_17260) lpxK 3833698..3834708 (-) 1011 WP_305429118.1 tetraacyldisaccharide 4'-kinase -
  PSH77_RS17275 (PSH77_17265) - 3834708..3835136 (-) 429 WP_058425436.1 biopolymer transporter ExbD -
  PSH77_RS17280 (PSH77_17270) exbB 3835133..3835768 (-) 636 WP_058425437.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH77_RS17285 (PSH77_17275) comA 3835852..3838077 (-) 2226 WP_305429121.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH77_RS17290 (PSH77_17280) - 3838213..3838728 (+) 516 WP_071491867.1 DUF2062 domain-containing protein -
  PSH77_RS17295 (PSH77_17285) - 3838725..3840095 (-) 1371 WP_305429122.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22859.03 Da        Isoelectric Point: 7.3615

>NTDB_id=785670 PSH77_RS17280 WP_058425437.1 3835133..3835768(-) (exbB) [Pseudomonas extremorientalis strain FP1754]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=785670 PSH77_RS17280 WP_058425437.1 3835133..3835768(-) (exbB) [Pseudomonas extremorientalis strain FP1754]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGCTCCATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGCCGCGTGACCCCCGAGCATCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAACTGGACAAGGAAAAGCTCAAGGAACTGCGCGCCAACTCCCCGTTGGGTGAGATCCTTGCCGCAGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCCCGCGTCATTCATGAACTGGAGCGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCATTGCTCGGCTTGCTCGGCACGGTGTTGGGCATGATCGACATTTTCA
GTTCGTTCATGGGCTCCGGCATGACCACCAACGCGGCCGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATCACTACGGCG
GCCGGCCTGATGGTGGGTATTCCTTCGGTGTTCTTCCACCGTTTCCTGCAACGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGCGACGTGGACCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H0L153

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848