Detailed information NTG0785645

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PSH90_RS19285
• Genome accession: NZ_CP117458
• Coordinates: 4339927..4342161 (-)
• Length: 744 a.a.
• NCBI ID: WP_305381318.1
• Uniprot ID: A0AAQ3G1Q8
• Organism: Pseudomonas sp. FP1762
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4334927..4347161

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH90_RS19250 (PSH90_19240)	murB	4335305..4336324 (-)	1020	WP_056788218.1	UDP-N-acetylmuramate dehydrogenase	-
PSH90_RS19255 (PSH90_19245)	-	4336321..4336785 (-)	465	WP_056788214.1	low molecular weight protein-tyrosine-phosphatase	-
PSH90_RS19260 (PSH90_19250)	kdsB	4336785..4337549 (-)	765	WP_305381314.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PSH90_RS19265 (PSH90_19255)	-	4337546..4337731 (-)	186	WP_003179363.1	Trm112 family protein	-
PSH90_RS19270 (PSH90_19260)	lpxK	4337755..4338765 (-)	1011	WP_305381316.1	tetraacyldisaccharide 4'-kinase	-
PSH90_RS19275 (PSH90_19265)	-	4338765..4339193 (-)	429	WP_016771006.1	biopolymer transporter ExbD	-
PSH90_RS19280 (PSH90_19270)	exbB	4339190..4339825 (-)	636	WP_016771007.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PSH90_RS19285 (PSH90_19275)	comA	4339927..4342161 (-)	2235	WP_305381318.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PSH90_RS19290 (PSH90_19280)	-	4342298..4342816 (+)	519	WP_039760200.1	DUF2062 domain-containing protein	-
PSH90_RS19295 (PSH90_19285)	-	4342956..4343735 (-)	780	WP_056788203.1	ABC transporter permease	-
PSH90_RS19300 (PSH90_19290)	-	4343732..4344664 (-)	933	WP_076563818.1	ABC transporter ATP-binding protein	-
PSH90_RS19305 (PSH90_19295)	-	4344798..4345421 (-)	624	WP_305381319.1	glutathione S-transferase family protein	-
PSH90_RS19310 (PSH90_19300)	-	4345465..4346124 (-)	660	WP_122507604.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81867.94 Da
• Isoelectric Point: 9.5996

>NTDB_id=785645 PSH90_RS19285 WP_305381318.1 4339927..4342161(-) (comA) [Pseudomonas sp. FP1762]
MRTGMMALAVGLLAPVFLPALPPVGWLLVLPMVALMLLPFRSFPLAFLLFGFTWACVGAQWALNDRLPPSLDGETRWLEG
RVVGLPQHSDGVVRFELADARSRHEKLPSLLRLAWYAGPPVNSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TIKDGQRLAEARHAWRDGVRQRLLAVDAQGREGALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGLLAAVMYLL
VAGLARFGIWPVRWPWLPWACGLAFAAALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLFDPL
ASLRPGFWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALSLPISVSGPVANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDWLFIGLALIAGQWPAWIPAAIPWWALVLGSLGAILLLLPRGVPMRPLGWPLLLLLA
LPPQERIEEGRADVWQIDVGQGLAIFVRTRHHALLYDAGPRFGEFDLGERVVLPALRKLNVQALDLMLLSHADADHAGGA
RAVMRGLNVHRVVSGDPPNLPPELNAEACASGEQWQWDGVRFQLWQWSAADDSNQRSCVLQIEANGERLLLTGDIDTHAE
RVLLDSALAVPTQWLQSPHHGSRSSSSMALLKTLQPEAVLISRGHGNSFGHPHPTVLARYRKQGLPIYDSAEQGAIHLQL
GSFKPPWTMRQQRRFWRDPPVPGR

Nucleotide

• Length: 2235 bp

>NTDB_id=785645 PSH90_RS19285 WP_305381318.1 4339927..4342161(-) (comA) [Pseudomonas sp. FP1762]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTTTTGCCGGCCTTGCCGCCGGTCGGTTGGTT
GCTGGTGCTGCCAATGGTGGCGCTGATGTTGCTGCCGTTTCGCAGCTTTCCATTGGCGTTTTTGCTGTTTGGCTTTACCT
GGGCCTGCGTTGGCGCGCAGTGGGCGCTAAATGACCGCTTGCCACCGAGCCTCGACGGCGAAACCCGTTGGCTCGAAGGG
CGCGTGGTCGGTTTGCCGCAACACAGCGATGGCGTGGTGCGTTTCGAGCTGGCTGATGCGCGCTCACGCCACGAAAAACT
GCCATCGCTGCTGCGCCTGGCCTGGTACGCCGGGCCGCCGGTCAACAGCGGCGAACGCTGGCGACTGGCGGTGAAGTTGA
AGCGCCCGGGTGGCTTGCTCAACCCGGACGCCTTCGATTACGAGGCCTGGCTGCTGGCGCAACGGATTGGGGCGACCGGC
ACGATCAAGGATGGCCAGCGCTTGGCTGAGGCTCGGCATGCATGGCGCGACGGCGTTCGCCAACGCCTGCTGGCGGTGGA
TGCGCAAGGACGCGAGGGCGCGCTGGCGGCGCTGGTGCTTGGCGACGGTTCGGGGCTGAGTCGCGAGGACTGGCAGATTC
TGCAAGACACCGGCACCGTGCATTTGCTGGTGATCTCCGGACAGCACATCGGTTTGCTGGCGGCTGTAATGTATCTGCTG
GTCGCCGGGCTGGCGCGTTTCGGAATCTGGCCGGTGCGCTGGCCATGGTTGCCGTGGGCGTGTGGCCTGGCATTCGCGGC
GGCGCTGGGTTACGGCTTGCTCGCCGGGTTCGATGTGCCGGTGCAGCGCGCCTGCGTGATGGTGGCGCTGGTGCTGCTGT
GGCGGCTGCGTTTTCGCCATCTCGGCGCGTGGTGGCCGTTATTGCTGGCGTTCAATGGCGTGCTGTTGTTCGATCCGCTG
GCCAGTTTGCGTCCAGGTTTCTGGCTGTCCTTCGCAGCCGTTGCAGTACTGATTTTCACCTTCGGCGGGCGGCTTGGGGC
CTGGCGGTGGTGGCAGACCTGGACCCGCGCGCAGTGGCTGATCGCGATCGGCTTGTGTCCGGTGTTGCTGGCGTTGAGCT
TGCCCATCAGCGTCAGCGGGCCTGTAGCCAATCTGCTGGCGGTACCGTGGGTCAGCCTCGTGGTGCTGCCGCCGGCATTG
CTCGGCACGCTATTGCTGCCCGTGCCTTATGTTGGCGAAGGACTGTTGTGGCTGGCCGGTGGTTTGATCGACTGGCTGTT
TATCGGGCTGGCGCTGATTGCCGGGCAATGGCCGGCGTGGATACCGGCCGCCATTCCATGGTGGGCTTTGGTCCTGGGCA
GCCTTGGCGCCATTTTATTGCTGTTGCCCCGTGGCGTGCCAATGCGTCCGTTGGGCTGGCCGCTGCTGTTGCTCTTGGCA
CTGCCGCCTCAAGAGCGAATAGAGGAAGGGCGAGCCGATGTCTGGCAAATCGACGTCGGCCAAGGCTTGGCGATTTTTGT
GCGCACGCGACATCACGCATTGCTCTATGACGCCGGCCCGCGTTTCGGCGAGTTCGATCTCGGCGAGCGAGTGGTATTGC
CAGCGTTACGTAAACTCAATGTGCAAGCGCTCGACTTGATGCTGCTCAGCCACGCTGACGCCGATCACGCTGGCGGCGCC
CGGGCGGTCATGCGTGGATTGAACGTGCACCGCGTGGTCAGCGGCGATCCGCCAAACCTGCCGCCGGAGCTGAACGCCGA
AGCCTGCGCAAGTGGCGAACAATGGCAGTGGGACGGCGTGCGGTTCCAGCTCTGGCAATGGTCGGCGGCAGATGACAGCA
ACCAGCGTTCCTGTGTGTTGCAGATCGAAGCCAACGGCGAACGCCTGCTGCTCACTGGCGATATCGACACTCATGCCGAG
CGCGTCCTGCTCGACAGCGCCTTGGCCGTGCCGACGCAGTGGCTGCAATCGCCCCATCACGGCAGTCGCAGTTCATCGTC
GATGGCCCTGCTCAAAACCTTGCAGCCCGAAGCGGTGCTGATCTCCCGTGGCCACGGCAACTCCTTCGGTCATCCGCATC
CCACCGTGCTGGCGCGCTACCGCAAGCAAGGTCTGCCCATCTACGACAGCGCCGAACAAGGTGCCATTCATTTGCAACTG
GGCAGCTTCAAGCCGCCGTGGACGATGCGGCAACAGCGGCGTTTCTGGCGCGATCCGCCGGTCCCGGGCCGTTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.865	96.64	0.608
comA	Ralstonia pseudosolanacearum GMI1000	35.256	100	0.37