Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH90_RS19280 Genome accession   NZ_CP117458
Coordinates   4339190..4339825 (-) Length   211 a.a.
NCBI ID   WP_016771007.1    Uniprot ID   A0AAU7ERB8
Organism   Pseudomonas sp. FP1762     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4334190..4344825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH90_RS19245 (PSH90_19235) - 4334584..4335054 (-) 471 WP_041479453.1 (2Fe-2S)-binding protein -
  PSH90_RS19250 (PSH90_19240) murB 4335305..4336324 (-) 1020 WP_056788218.1 UDP-N-acetylmuramate dehydrogenase -
  PSH90_RS19255 (PSH90_19245) - 4336321..4336785 (-) 465 WP_056788214.1 low molecular weight protein-tyrosine-phosphatase -
  PSH90_RS19260 (PSH90_19250) kdsB 4336785..4337549 (-) 765 WP_305381314.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH90_RS19265 (PSH90_19255) - 4337546..4337731 (-) 186 WP_003179363.1 Trm112 family protein -
  PSH90_RS19270 (PSH90_19260) lpxK 4337755..4338765 (-) 1011 WP_305381316.1 tetraacyldisaccharide 4'-kinase -
  PSH90_RS19275 (PSH90_19265) - 4338765..4339193 (-) 429 WP_016771006.1 biopolymer transporter ExbD -
  PSH90_RS19280 (PSH90_19270) exbB 4339190..4339825 (-) 636 WP_016771007.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH90_RS19285 (PSH90_19275) comA 4339927..4342161 (-) 2235 WP_305381318.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH90_RS19290 (PSH90_19280) - 4342298..4342816 (+) 519 WP_039760200.1 DUF2062 domain-containing protein -
  PSH90_RS19295 (PSH90_19285) - 4342956..4343735 (-) 780 WP_056788203.1 ABC transporter permease -
  PSH90_RS19300 (PSH90_19290) - 4343732..4344664 (-) 933 WP_076563818.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22913.06 Da        Isoelectric Point: 6.8770

>NTDB_id=785644 PSH90_RS19280 WP_016771007.1 4339190..4339825(-) (exbB) [Pseudomonas sp. FP1762]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=785644 PSH90_RS19280 WP_016771007.1 4339190..4339825(-) (exbB) [Pseudomonas sp. FP1762]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACACTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCAGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTCATTCATGAACTCGAACGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGCCTGCTCGGCACCGTGCTGGGCATGATCGACATTTTCA
GTGCCTTCACCGGCTCTGGCATGACCACCAATGCCTCGGTACTGGCCGGCGGTATTTCCAAAGCGCTGATCACGACCGCA
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGCTTCCTGCAACGTCGTATCGACGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGATGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858