Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSH60_RS16555 Genome accession   NZ_CP117456
Coordinates   3674485..3676710 (-) Length   741 a.a.
NCBI ID   WP_256454607.1    Uniprot ID   -
Organism   Pseudomonas simiae strain FP1885     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3669485..3681710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH60_RS16520 (PSH60_16515) murB 3669890..3670909 (-) 1020 WP_010209654.1 UDP-N-acetylmuramate dehydrogenase -
  PSH60_RS16525 (PSH60_16520) - 3670906..3671370 (-) 465 WP_010209653.1 low molecular weight protein-tyrosine-phosphatase -
  PSH60_RS16530 (PSH60_16525) kdsB 3671370..3672134 (-) 765 WP_154847091.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH60_RS16535 (PSH60_16530) - 3672131..3672316 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH60_RS16540 (PSH60_16535) lpxK 3672341..3673351 (-) 1011 WP_305375133.1 tetraacyldisaccharide 4'-kinase -
  PSH60_RS16545 (PSH60_16540) - 3673351..3673779 (-) 429 WP_010209650.1 biopolymer transporter ExbD -
  PSH60_RS16550 (PSH60_16545) exbB 3673776..3674411 (-) 636 WP_010209649.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH60_RS16555 (PSH60_16550) comA 3674485..3676710 (-) 2226 WP_256454607.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH60_RS16560 (PSH60_16555) - 3676846..3677361 (+) 516 WP_021492748.1 DUF2062 domain-containing protein -
  PSH60_RS16565 (PSH60_16560) - 3677358..3678728 (-) 1371 WP_010209646.1 sensor histidine kinase -
  PSH60_RS16570 (PSH60_16565) - 3678715..3679443 (-) 729 WP_010209645.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80494.53 Da        Isoelectric Point: 11.0599

>NTDB_id=785588 PSH60_RS16555 WP_256454607.1 3674485..3676710(-) (comA) [Pseudomonas simiae strain FP1885]
MRTGMFAFALGLLALRFLPALPPTGWLIALLVLALMLLPFRTYPLAFFLLGLSWACISAQWALDDRLRPALEGQTRWVEG
QVSGLPQQTGDGVRFVLTDSRSRNARLPKRIRVSWRGGPPVRSGERWRLAITLKRPAGLLNFHGFDQEAWLLAQRIGATG
TVKDGERLAPAAAAWRDSVRQRLLAVDAQGREAGLIALVLGDGSGLAAADWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IAGLARYGFWPRTWPWLPWACGLAFTTALGYGLLAGFGVPVQRACVMVGLVLLWRWRLRHLGLWWPLLLALNGVLVLEPL
ASVQPGFWLSFAAVAVLILAFGGRLGPWSLWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPFANLVAVPWISLVVLPLAL
LGSALLVLPFVGEGLLWLAGGALDALFNGLAWLAGRMPAWIPAEVPPGYWLVSLLGATLLLLPKGVPFRVLGWPMLLLAV
FPPRAPVPDGQVEVTQLDVGQGQSLILRTRHHTLLYDAGPRSGAFDLGARVVLPSLRKLGIGELDMLLLSHADADHAGGA
AAIAKGMPIKRVVGGETEGLPISLGTQPCVSGERWTWDGVTFELWQWPDAISGNAKSCVLQVQAKGERLLLTGDIDRAAE
QAMLASHLAVPTDWLQAPHHGSRSSSSWPFVERLAPRSVLISRGRSNAFGHPHPQVMARYQRLGSQVYDSAEQGAVRLRL
GAFAAPVVARSQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=785588 PSH60_RS16555 WP_256454607.1 3674485..3676710(-) (comA) [Pseudomonas simiae strain FP1885]
ATGAGGACAGGGATGTTCGCGTTTGCGCTGGGGTTGCTGGCCTTGCGCTTTTTACCGGCATTGCCGCCGACCGGTTGGCT
GATCGCCCTGCTGGTGTTGGCCTTGATGCTGTTGCCGTTTCGCACTTATCCCTTGGCGTTTTTTCTGTTGGGGCTGAGTT
GGGCCTGTATCAGCGCGCAGTGGGCGCTGGATGACCGTCTCAGGCCCGCGCTGGAGGGGCAAACACGCTGGGTGGAAGGG
CAGGTCAGCGGGCTGCCGCAACAGACGGGCGATGGCGTGCGCTTCGTACTCACCGACAGTCGGTCGCGTAACGCTCGGTT
GCCCAAGCGCATCCGGGTGTCCTGGCGCGGTGGGCCGCCCGTGCGCAGCGGTGAACGCTGGCGCCTGGCAATCACCCTCA
AGCGGCCGGCCGGGTTGCTGAACTTTCATGGGTTTGATCAGGAGGCCTGGCTGCTCGCCCAGCGCATCGGCGCCACGGGT
ACGGTAAAGGACGGAGAGCGCCTGGCCCCGGCTGCCGCCGCCTGGCGTGACAGTGTGCGTCAGCGCCTGCTGGCGGTGGA
TGCCCAAGGCAGGGAGGCAGGCCTGATTGCCTTGGTGTTGGGCGATGGCTCTGGATTGGCGGCGGCTGATTGGCAGGTAC
TGCAGGACACCGGCACTGTGCACCTGCTGGTCATCTCCGGCCAGCACATCGGCTTGCTCGCTGGCTTGATCTACGGATTG
ATCGCCGGCCTGGCGCGCTATGGGTTCTGGCCTCGAACCTGGCCGTGGCTGCCGTGGGCCTGTGGGCTGGCGTTCACCAC
GGCATTGGGTTATGGCTTGCTGGCCGGGTTTGGCGTGCCGGTACAGCGCGCCTGTGTGATGGTTGGGTTGGTATTGTTGT
GGCGATGGCGCTTGCGTCATCTCGGGCTGTGGTGGCCGTTGTTGCTGGCGCTCAATGGGGTGCTGGTCCTGGAACCATTG
GCCAGTGTGCAGCCGGGTTTCTGGCTGTCATTTGCGGCGGTGGCGGTGCTGATCCTGGCGTTTGGCGGACGGCTGGGGCC
CTGGAGCCTATGGCAGGCCTGGACCCGGCCGCAGTGGTTGATTGCCATCGGGTTGTTTCCGGTCTTGCTGGTCTTGGGGT
TGCCCATCAGCCTGAGCGCACCATTCGCTAACCTGGTGGCGGTGCCATGGATCAGCCTGGTGGTATTGCCGTTGGCCCTG
TTGGGCAGCGCATTGCTGGTGCTGCCGTTTGTGGGGGAAGGATTGCTCTGGCTGGCGGGAGGGGCGCTGGATGCCTTGTT
TAACGGCTTGGCGTGGCTCGCCGGGCGGATGCCGGCCTGGATTCCGGCCGAAGTACCGCCGGGGTATTGGCTGGTGAGTC
TGCTGGGCGCCACGTTGCTCCTGCTGCCCAAGGGCGTGCCGTTTCGTGTGCTGGGCTGGCCGATGCTGTTGCTGGCGGTG
TTTCCACCGCGAGCGCCGGTGCCTGACGGGCAGGTGGAGGTGACGCAGCTTGACGTCGGCCAGGGGCAATCGCTGATTTT
GCGTACCCGCCATCACACCTTGCTGTACGACGCCGGCCCGCGCTCCGGAGCTTTTGACCTGGGGGCCCGCGTGGTACTGC
CATCTTTGCGAAAACTCGGGATAGGGGAGCTGGACATGCTGCTGCTCAGCCACGCCGACGCCGATCATGCCGGTGGCGCG
GCAGCCATTGCCAAAGGCATGCCGATCAAGCGCGTGGTGGGCGGAGAGACCGAAGGCCTGCCAATATCGCTCGGCACCCA
GCCTTGCGTCAGTGGCGAGCGCTGGACCTGGGATGGCGTGACCTTCGAACTCTGGCAATGGCCTGACGCTATCAGCGGCA
ACGCGAAGTCCTGCGTTTTGCAGGTGCAGGCCAAGGGTGAGCGCCTGTTGCTGACCGGTGATATTGACCGCGCAGCCGAA
CAGGCCATGCTCGCGTCCCACCTTGCGGTGCCCACCGATTGGCTGCAGGCGCCGCACCATGGCAGTCGCAGTTCTTCGTC
CTGGCCCTTTGTGGAACGGCTTGCGCCGCGATCTGTGCTGATCTCGCGTGGGCGCAGCAACGCGTTCGGCCATCCCCATC
CGCAGGTGATGGCGCGTTACCAACGGTTGGGCAGCCAGGTGTATGACTCTGCCGAGCAGGGCGCCGTGCGTCTGCGATTA
GGGGCTTTCGCGGCGCCGGTTGTTGCGCGCAGTCAACGCCGGTTCTGGCGCGAGCGGTTACCTTAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(19-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-665)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.556

97.166

0.588
  comA Ralstonia pseudosolanacearum GMI1000

34.982

100

0.401