Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH60_RS16550 Genome accession   NZ_CP117456
Coordinates   3673776..3674411 (-) Length   211 a.a.
NCBI ID   WP_010209649.1    Uniprot ID   A0A1N7UJE1
Organism   Pseudomonas simiae strain FP1885     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3668776..3679411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH60_RS16515 (PSH60_16510) - 3669156..3669827 (+) 672 WP_010209655.1 Bax inhibitor-1/YccA family protein -
  PSH60_RS16520 (PSH60_16515) murB 3669890..3670909 (-) 1020 WP_010209654.1 UDP-N-acetylmuramate dehydrogenase -
  PSH60_RS16525 (PSH60_16520) - 3670906..3671370 (-) 465 WP_010209653.1 low molecular weight protein-tyrosine-phosphatase -
  PSH60_RS16530 (PSH60_16525) kdsB 3671370..3672134 (-) 765 WP_154847091.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH60_RS16535 (PSH60_16530) - 3672131..3672316 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH60_RS16540 (PSH60_16535) lpxK 3672341..3673351 (-) 1011 WP_305375133.1 tetraacyldisaccharide 4'-kinase -
  PSH60_RS16545 (PSH60_16540) - 3673351..3673779 (-) 429 WP_010209650.1 biopolymer transporter ExbD -
  PSH60_RS16550 (PSH60_16545) exbB 3673776..3674411 (-) 636 WP_010209649.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH60_RS16555 (PSH60_16550) comA 3674485..3676710 (-) 2226 WP_256454607.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH60_RS16560 (PSH60_16555) - 3676846..3677361 (+) 516 WP_021492748.1 DUF2062 domain-containing protein -
  PSH60_RS16565 (PSH60_16560) - 3677358..3678728 (-) 1371 WP_010209646.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22843.03 Da        Isoelectric Point: 7.3615

>NTDB_id=785587 PSH60_RS16550 WP_010209649.1 3673776..3674411(-) (exbB) [Pseudomonas simiae strain FP1885]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGAGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=785587 PSH60_RS16550 WP_010209649.1 3673776..3674411(-) (exbB) [Pseudomonas simiae strain FP1885]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGCTCTATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGCCGCGTGACCCCCGAGCATCTGCTGGGGCAGGTCTGGGGTTGGATCAAGAACA
AGCAACTGGACAAGGAAAAGCTCAAGGAACTGCGCGCCAACTCCCCGTTGGGTGAAATCCTTGCTGCAGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCCCGCGTCATTCATGAGCTTGAGCGTTATAT
CAATGCTCTCGGCACCATCGCCGCGATGGCGCCGTTGCTCGGCTTGCTCGGCACAGTGCTGGGCATGATCGATATTTTCA
GCTCATTCATGGGCGCCGGCATGACCACCAACGCGGCCGTACTGGCCGGCGGTATCTCCAAAGCGCTGATCACCACAGCC
GCAGGCTTGATGGTGGGTATTCCTTCGGTGTTCTTCCACCGATTCCTGCAACGTCGCATTGATGAGCTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAAGGCGACCGTGACGTCGACCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1N7UJE1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844