Detailed information NTG0785580

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSH60_RS03845
• Genome accession: NZ_CP117456
• Coordinates: 863632..864498 (-)
• Length: 288 a.a.
• NCBI ID: WP_069673361.1
• Uniprot ID: -
• Organism: Pseudomonas simiae strain FP1885
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 858632..869498

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH60_RS03805 (PSH60_03805)	-	859054..860352 (-)	1299	WP_042571057.1	NAD(P)/FAD-dependent oxidoreductase	-
PSH60_RS03810 (PSH60_03810)	-	860413..860586 (-)	174	WP_010213243.1	DUF3094 family protein	-
PSH60_RS03815 (PSH60_03815)	-	860641..861270 (-)	630	WP_010213242.1	DUF1780 domain-containing protein	-
PSH60_RS03820 (PSH60_03820)	-	861374..861841 (+)	468	WP_010213240.1	hypothetical protein	-
PSH60_RS03825 (PSH60_03825)	-	861838..862527 (+)	690	WP_044286632.1	energy-coupling factor ABC transporter permease	-
PSH60_RS03830 (PSH60_03830)	-	862603..862818 (+)	216	WP_003171680.1	hypothetical protein	-
PSH60_RS03835 (PSH60_03835)	yacG	862815..863015 (-)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
PSH60_RS03840 (PSH60_03840)	coaE	863012..863635 (-)	624	WP_010213235.1	dephospho-CoA kinase	-
PSH60_RS03845 (PSH60_03845)	pilD	863632..864498 (-)	867	WP_069673361.1	A24 family peptidase	Machinery gene
PSH60_RS03850 (PSH60_03850)	pilC	864495..865703 (-)	1209	WP_198831958.1	type II secretion system F family protein	Machinery gene
PSH60_RS03855 (PSH60_03855)	-	865897..866319 (+)	423	WP_021491914.1	pilin	-
PSH60_RS03860 (PSH60_03860)	-	866355..867755 (+)	1401	WP_010213231.1	O-antigen ligase	-
PSH60_RS03870 (PSH60_03870)	-	868022..868327 (+)	306	WP_010213230.1	DUF6388 family protein	-
PSH60_RS03875 (PSH60_03875)	nadC	868375..869223 (-)	849	WP_010213228.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31567.76 Da
• Isoelectric Point: 8.2547

>NTDB_id=785580 PSH60_RS03845 WP_069673361.1 863632..864498(-) (pilD) [Pseudomonas simiae strain FP1885]
MSLLLAGPPWAFVALAALLGLIVGSFLNVLVWRLPTMLEREWRAQALEVLGLPAEPAGPTYNLMHPSSCCPHCNHPIRPW
ENIPLLSYLFLRGRCAHCQGAISARYPLTELACALISAWVAWRFGFGWQAGAVLVLSWGLLAMSLIDADHQLLPDVLVMP
LLWLGLIVNGFGLLTTLPEALWGAVIGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVV
VGLILMRLRKSHASAPMPFGPYLAIAGWIALLWGGQITNFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=785580 PSH60_RS03845 WP_069673361.1 863632..864498(-) (pilD) [Pseudomonas simiae strain FP1885]
TTGAGCCTGCTGTTGGCCGGCCCACCCTGGGCTTTTGTTGCGCTGGCGGCGCTGCTGGGCCTGATCGTCGGCAGCTTTCT
CAACGTGCTGGTGTGGCGCCTTCCAACGATGCTCGAACGGGAATGGCGGGCCCAGGCGCTCGAAGTGCTCGGCTTGCCCG
CTGAGCCTGCCGGCCCGACCTACAACCTGATGCACCCCAGTTCCTGCTGCCCACACTGCAATCATCCGATACGTCCGTGG
GAAAATATCCCACTGCTCAGTTACCTGTTTCTGCGAGGCCGCTGCGCCCATTGCCAAGGTGCGATCAGCGCCCGTTATCC
GCTCACTGAACTGGCGTGTGCATTGATCTCAGCCTGGGTGGCCTGGCGTTTCGGCTTTGGCTGGCAGGCGGGCGCAGTGC
TGGTGCTGAGCTGGGGATTGTTGGCGATGAGCCTGATCGATGCAGACCATCAGCTGTTGCCGGATGTGCTAGTGATGCCG
CTGCTGTGGCTGGGGCTGATCGTCAACGGGTTCGGCCTGCTGACGACACTGCCCGAGGCCTTGTGGGGTGCGGTCATCGG
GTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGACGGCATGGGCCATGGCGACTTCAAGC
TGCTGGCCTTGCTCGGCGCCTGGGGGGGCTGGCAGATCCTGCCCATGACCCTGTTGATGTCGTCGCTGGTGGGTGTGGTC
GTGGGCTTGATCCTGATGCGCCTGCGCAAGTCCCACGCGTCGGCACCGATGCCATTTGGTCCGTATCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCAACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.317	96.528	0.524
pilD	Vibrio campbellii strain DS40M4	50.896	96.875	0.493
pilD	Neisseria gonorrhoeae MS11	51.111	93.75	0.479
pilD	Acinetobacter nosocomialis M2	49.814	93.403	0.465
pilD	Acinetobacter baumannii D1279779	49.442	93.403	0.462