Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSH89_RS16035 Genome accession   NZ_CP117455
Coordinates   3632401..3634626 (-) Length   741 a.a.
NCBI ID   WP_231125716.1    Uniprot ID   -
Organism   Pseudomonas sp. FP1911     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3627401..3639626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH89_RS16000 (PSH89_15995) murB 3627771..3628790 (-) 1020 WP_038450501.1 UDP-N-acetylmuramate dehydrogenase -
  PSH89_RS16005 (PSH89_16000) - 3628787..3629251 (-) 465 WP_038450502.1 low molecular weight protein-tyrosine-phosphatase -
  PSH89_RS16010 (PSH89_16005) kdsB 3629251..3630015 (-) 765 WP_038450504.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH89_RS16015 (PSH89_16010) - 3630012..3630197 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH89_RS16020 (PSH89_16015) lpxK 3630222..3631232 (-) 1011 WP_014718876.1 tetraacyldisaccharide 4'-kinase -
  PSH89_RS16025 (PSH89_16020) - 3631232..3631660 (-) 429 WP_014718877.1 biopolymer transporter ExbD -
  PSH89_RS16030 (PSH89_16025) exbB 3631657..3632292 (-) 636 WP_003192043.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH89_RS16035 (PSH89_16030) comA 3632401..3634626 (-) 2226 WP_231125716.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH89_RS16040 (PSH89_16035) - 3634762..3635277 (+) 516 WP_003192045.1 DUF2062 domain-containing protein -
  PSH89_RS16045 (PSH89_16040) - 3635281..3636639 (-) 1359 WP_014718879.1 sensor histidine kinase -
  PSH89_RS16050 (PSH89_16045) - 3636626..3637354 (-) 729 WP_038450508.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80464.70 Da        Isoelectric Point: 10.6051

>NTDB_id=785563 PSH89_RS16035 WP_231125716.1 3632401..3634626(-) (comA) [Pseudomonas sp. FP1911]
MKTGMLALALGLLMLRWLPALPPGGALLGMLVLALMLLPFRSYPLAFFLVGLSWACFSAQRALDDRLQPALDGQTRWVEG
RVVGLPQQTVTGVRFELADGRLRKGRLPKRIRVSWHGGPVVNSGERWRLALKLKRPAGLLNFHGVDHEAWLLAQRIGATA
TVKDGERLAPARNAWRDAVRQRLMAVDAQGREAGLAALVLGDGSGLAPEDWQVLQDTGTVHLLVISGQHIGLLAGLIYGF
VAVLARYGCWPQTWPWLPWACGLAFGAALGYGLLAGFGVPVQRACMMVGLVLLWRLRFRHLGLWWPLLLALNGVLVLEPL
ASLQVGFWLSFAAVAVLLLAFGGRLGPWSVWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPVANLFAVPWISLVVLPLAL
LGTALLWVPLAGEAVLWLAGGALDGLFKGLALLAGQLPAWVPPEVPLGYWLVSLMGAVVLLLPKGVPFRVLGWPMLLMAV
FPPREWVPHGQVEVLQLDVGQGQALILRTRHHTLLYDAGPRSGPVDLGARVVLPSLKKLGVGQLDMMLLSHADADHAGGA
AAVARGLPVKRVVGGETEGLPAFLATQPCTSGERWEWDGVWFELWQWAGGLEGNPRSCVLHVQANGERLLLTGDIDRAAE
QAFLASPLAVPTDWLQAPHHGSRSSSSWPFVQRLAPTSVLISRGRSNTFGHPHPQVLERYQALGSRVYDSAEQGAVRLRL
GAFVPATVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=785563 PSH89_RS16035 WP_231125716.1 3632401..3634626(-) (comA) [Pseudomonas sp. FP1911]
ATGAAGACAGGGATGTTGGCGTTGGCGCTGGGGTTGCTGATGTTGCGTTGGTTGCCGGCCCTGCCGCCCGGCGGCGCGTT
ATTGGGCATGCTGGTGTTGGCCTTGATGCTGTTGCCTTTTCGGTCCTATCCCTTGGCCTTTTTTCTGGTGGGCTTGAGCT
GGGCTTGCTTCAGCGCGCAGCGGGCGTTGGATGATCGACTGCAGCCGGCCCTGGATGGGCAGACTCGTTGGGTGGAGGGG
CGCGTGGTCGGCTTGCCCCAGCAGACGGTTACGGGCGTGCGCTTTGAACTGGCCGACGGCCGGTTGCGCAAGGGGCGGCT
GCCCAAACGTATCCGCGTGTCCTGGCACGGCGGGCCAGTGGTGAACAGCGGCGAACGCTGGCGCCTGGCGCTGAAACTCA
AGCGGCCTGCGGGCCTGCTCAATTTTCATGGAGTTGACCACGAAGCCTGGCTGCTGGCCCAGCGTATCGGTGCCACTGCA
ACGGTAAAAGATGGTGAACGCCTCGCACCGGCCCGCAATGCCTGGCGCGATGCTGTTCGCCAGCGCCTGATGGCGGTGGA
TGCCCAAGGCCGCGAGGCGGGCTTGGCGGCGTTGGTATTGGGCGACGGTTCCGGCTTGGCGCCTGAGGATTGGCAGGTGT
TGCAGGACACGGGCACGGTGCATCTGCTGGTGATTTCCGGGCAGCATATCGGCTTGTTGGCGGGCTTGATCTACGGCTTT
GTCGCGGTATTGGCGCGCTATGGTTGCTGGCCACAAACCTGGCCGTGGCTGCCGTGGGCGTGCGGCCTGGCTTTTGGCGC
AGCGTTGGGTTATGGCCTGCTGGCGGGGTTTGGCGTGCCGGTGCAGCGGGCTTGTATGATGGTCGGCCTGGTGTTGCTGT
GGCGTCTGCGTTTCCGCCATTTGGGGCTGTGGTGGCCGTTGCTGCTGGCGCTGAACGGCGTGCTGGTGCTGGAGCCCTTG
GCCAGCCTGCAGGTAGGGTTCTGGTTATCGTTTGCGGCGGTCGCGGTATTGTTGCTGGCGTTCGGCGGGCGCTTGGGGCC
GTGGAGCGTCTGGCAGGCGTGGACCCGGCCTCAGTGGTTGATTGCCATTGGCTTGTTTCCGGTGTTGCTGGTGTTGGGTT
TGCCCATCAGCCTCAGCGCACCGGTGGCCAATCTGTTTGCCGTGCCGTGGATCAGCCTGGTGGTGCTGCCCTTGGCGCTG
CTGGGCACGGCGTTGTTGTGGGTACCGCTGGCGGGGGAAGCTGTGCTGTGGCTGGCCGGCGGCGCGCTGGACGGATTGTT
CAAGGGCCTGGCGCTGCTGGCCGGGCAATTGCCGGCCTGGGTGCCGCCCGAGGTGCCGCTGGGGTATTGGCTGGTCAGCC
TGATGGGCGCGGTGGTGTTACTGCTGCCCAAAGGGGTGCCGTTCCGGGTGTTGGGCTGGCCCATGCTGTTGATGGCCGTT
TTTCCGCCCCGGGAGTGGGTGCCCCACGGACAGGTAGAGGTGCTGCAACTGGATGTCGGCCAGGGGCAGGCACTGATCCT
GCGCACCCGTCATCACACCTTGCTCTACGATGCCGGGCCGCGCTCGGGGCCTGTCGACCTCGGCGCGCGCGTCGTGTTGC
CGTCGTTGAAAAAACTCGGGGTAGGGCAGTTGGACATGATGCTGCTCAGCCATGCCGACGCCGATCACGCCGGTGGTGCG
GCAGCAGTGGCTCGGGGGTTGCCCGTCAAACGCGTGGTGGGCGGCGAAACCGAGGGCTTGCCAGCCTTTCTCGCCACCCA
GCCCTGTACCAGCGGCGAGCGATGGGAATGGGACGGGGTGTGGTTTGAACTGTGGCAGTGGGCGGGTGGGCTTGAGGGCA
ATCCGAGGTCGTGCGTGCTGCACGTCCAGGCCAATGGCGAACGCCTGCTGCTCACCGGCGACATTGACCGCGCTGCAGAA
CAGGCGTTTCTAGCTTCCCCGCTGGCGGTTCCGACCGACTGGCTACAGGCCCCGCACCATGGCAGCCGCAGTTCTTCGTC
CTGGCCTTTCGTACAACGGTTGGCGCCCACCTCGGTGCTGATTTCCCGCGGGCGCAGCAATACGTTCGGCCATCCTCATC
CGCAGGTCCTGGAGCGCTACCAAGCACTGGGCAGCCGGGTGTATGACAGCGCCGAACAGGGCGCCGTGCGCCTGCGCCTG
GGGGCGTTTGTGCCGGCGACGGTTGCGCGCAGCCAACGTCGTTTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-664)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.527

97.031

0.578
  comA Ralstonia pseudosolanacearum GMI1000

34.34

100

0.368