Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH89_RS16030 Genome accession   NZ_CP117455
Coordinates   3631657..3632292 (-) Length   211 a.a.
NCBI ID   WP_003192043.1    Uniprot ID   A0A0W0N0T4
Organism   Pseudomonas sp. FP1911     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3626657..3637292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH89_RS15995 (PSH89_15990) - 3627030..3627701 (+) 672 WP_003192030.1 Bax inhibitor-1/YccA family protein -
  PSH89_RS16000 (PSH89_15995) murB 3627771..3628790 (-) 1020 WP_038450501.1 UDP-N-acetylmuramate dehydrogenase -
  PSH89_RS16005 (PSH89_16000) - 3628787..3629251 (-) 465 WP_038450502.1 low molecular weight protein-tyrosine-phosphatase -
  PSH89_RS16010 (PSH89_16005) kdsB 3629251..3630015 (-) 765 WP_038450504.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH89_RS16015 (PSH89_16010) - 3630012..3630197 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH89_RS16020 (PSH89_16015) lpxK 3630222..3631232 (-) 1011 WP_014718876.1 tetraacyldisaccharide 4'-kinase -
  PSH89_RS16025 (PSH89_16020) - 3631232..3631660 (-) 429 WP_014718877.1 biopolymer transporter ExbD -
  PSH89_RS16030 (PSH89_16025) exbB 3631657..3632292 (-) 636 WP_003192043.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH89_RS16035 (PSH89_16030) comA 3632401..3634626 (-) 2226 WP_231125716.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH89_RS16040 (PSH89_16035) - 3634762..3635277 (+) 516 WP_003192045.1 DUF2062 domain-containing protein -
  PSH89_RS16045 (PSH89_16040) - 3635281..3636639 (-) 1359 WP_014718879.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22910.04 Da        Isoelectric Point: 7.3615

>NTDB_id=785562 PSH89_RS16030 WP_003192043.1 3631657..3632292(-) (exbB) [Pseudomonas sp. FP1911]
MWELVKSGGWMMLPIILSSIVALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=785562 PSH89_RS16030 WP_003192043.1 3631657..3632292(-) (exbB) [Pseudomonas sp. FP1911]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGTCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCACTTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAAAAGCTCAAGGAGCTGCGTGCCAATTCGCCACTGGGTGAAATCCTCGCCGCCGGCTTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAAGCGGCCGCCCGGGTTATCCATGAGCTGGAGCGCTATAT
CAACGCCCTCGGCACTATCGCCGCCATGGCGCCGTTGCTGGGTTTGCTCGGCACGGTATTGGGCATGATCGATATCTTCA
GCGCGTTCACGGGCTCGGGCATGACCACCAACGCGTCGGTACTGGCCGGCGGTATCTCCAAGGCCCTGATCACCACCGCC
GCGGGCTTGATGGTGGGTATCCCTTCGGTGTTCTTCCACCGTTTCCTACAGCGGCGCATTGATGAGCTGGTGGTCGGTAT
GGAACAGGAAGCCATCAAGTTGGTAGAAGTGGTGCAGGGCGACCGTGATGTAGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N0T4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858