Detailed information NTG0785514

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PSH72_RS24575
• Genome accession: NZ_CP117453
• Coordinates: 5433016..5434356 (+)
• Length: 446 a.a.
• NCBI ID: WP_305503343.1
• Uniprot ID: -
• Organism: Pseudomonas cucumis strain FP1962
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5428016..5439356

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH72_RS24550 (PSH72_24545)	pgeF	5428205..5428930 (-)	726	WP_305446947.1	peptidoglycan editing factor PgeF	-
PSH72_RS24555 (PSH72_24550)	rluD	5428927..5429889 (-)	963	WP_007901932.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PSH72_RS24560 (PSH72_24555)	-	5430042..5431064 (+)	1023	WP_305446948.1	outer membrane protein assembly factor BamD	-
PSH72_RS24565 (PSH72_24560)	-	5431201..5431434 (+)	234	WP_305446949.1	PP0621 family protein	-
PSH72_RS24570 (PSH72_24565)	pilS	5431424..5433013 (+)	1590	WP_305503341.1	PAS domain-containing sensor histidine kinase	Regulator
PSH72_RS24575 (PSH72_24570)	pilR	5433016..5434356 (+)	1341	WP_305503343.1	sigma-54 dependent transcriptional regulator	Regulator
PSH72_RS24580 (PSH72_24575)	thiO	5434414..5435514 (-)	1101	WP_305503344.1	glycine oxidase ThiO	-
PSH72_RS24585 (PSH72_24580)	-	5435571..5435972 (-)	402	WP_305503346.1	type IV pilin protein	-
PSH72_RS24590 (PSH72_24585)	-	5435987..5439109 (-)	3123	WP_305503348.1	pilus assembly protein	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49649.04 Da
• Isoelectric Point: 6.5112

>NTDB_id=785514 PSH72_RS24575 WP_305503343.1 5433016..5434356(+) (pilR) [Pseudomonas cucumis strain FP1962]
MSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLAEAQALLARETFDLCLTDMRLPDGTGLALVQHIQQCYAQVPVA
MITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVTSALSLPAPGGASSAIDRRLLGDSLPMRSLRKQIDKLARSQAPV
YISGESGSGKELVARLIHDQGPRATRPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAQGGTLFLDEVADL
PLAMQVKLLRAIQEKAVRSIGGQQETVVDVRILCATHKDLDTEVAAERFRQDLYYRLNVIELRVPPLRERRDDIELLANN
MLKRLATGTGQPAAKLHPQALDALKSYRFPGNVRELENMLERAHTLCENKQIEASDLRLVEGNCNSDSDVPDLTQIDNLE
AYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=785514 PSH72_RS24575 WP_305503343.1 5433016..5434356(+) (pilR) [Pseudomonas cucumis strain FP1962]
ATGAGCCCACGGCAAAAAATCCTGATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGGACGGAT
GAAACTCGACACCTTCAGTGCCCGCAACCTTGCAGAAGCACAGGCGCTGCTGGCACGGGAGACGTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCACCGGTCTGGCGCTGGTGCAGCACATCCAGCAGTGCTATGCGCAAGTGCCAGTAGCG
ATGATCACTGCCTACGGTAGCCTGGAGACGGCAATCAACGCGCTCAAGGCTGGCGCCTTCGATTTTTTGACCAAACCGGT
TGACCTGACCCGCTTGCGCGAACTGGTCACCAGCGCCTTGAGTCTGCCGGCACCAGGCGGTGCCAGCAGCGCCATCGACC
GTCGGCTACTGGGCGACTCCCTGCCGATGCGCAGCCTGCGCAAACAAATCGACAAACTGGCCCGCAGCCAGGCTCCGGTA
TACATCAGCGGTGAGTCCGGCAGCGGCAAGGAGTTGGTCGCCCGACTGATCCACGACCAAGGCCCACGCGCCACCCGACC
GTTCGTGCCGGTGAACTGTGGGGCTATCCCGTCGGAATTGATGGAAAGCGAGTTTTTCGGCCATCGCAAAGGCAGTTTCA
GCGGCGCCATCGAAGACAAACCCGGGCTGTTCCAGGCCGCTCAGGGTGGCACTTTGTTCCTCGATGAAGTGGCAGATCTG
CCGCTGGCGATGCAGGTCAAACTTTTGCGGGCCATTCAAGAGAAAGCCGTGCGCAGCATCGGTGGGCAGCAGGAAACCGT
GGTCGATGTGCGCATACTCTGTGCCACCCACAAAGACCTCGATACCGAAGTCGCCGCCGAACGCTTTCGCCAGGACTTGT
ACTACCGTCTGAATGTGATCGAGCTGCGGGTGCCGCCCTTGCGCGAACGCCGCGACGATATTGAGCTTCTGGCCAACAAT
ATGCTCAAGCGACTGGCGACTGGCACTGGCCAACCCGCTGCAAAACTCCACCCGCAAGCCCTCGACGCACTGAAAAGCTA
TCGTTTTCCAGGAAACGTGCGGGAATTGGAGAACATGCTTGAGCGGGCGCACACCTTGTGCGAGAACAAACAAATCGAAG
CCAGCGACCTACGGTTGGTGGAAGGTAACTGCAATTCGGACAGCGACGTGCCGGACCTGACGCAGATCGACAATCTGGAA
GCCTATCTGGAAAACGTCGAACGCAAACTCATCCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACGGCAGCGGCTCA
GCGGTTGAATCTGTCGTTTCGGTCGATGCGTTATCGACTGAAGAAGTTGGGGTTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.781	99.327	0.783
pilR	Acinetobacter baumannii strain A118	48.366	100	0.498