Detailed information NTG0785506

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PSH72_RS21360
• Genome accession: NZ_CP117453
• Coordinates: 4711107..4713341 (-)
• Length: 744 a.a.
• NCBI ID: WP_305502898.1
• Uniprot ID: -
• Organism: Pseudomonas cucumis strain FP1962
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4706107..4718341

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH72_RS21325 (PSH72_21320)	murB	4706488..4707507 (-)	1020	WP_305446502.1	UDP-N-acetylmuramate dehydrogenase	-
PSH72_RS21330 (PSH72_21325)	-	4707504..4707968 (-)	465	WP_305446503.1	low molecular weight protein-tyrosine-phosphatase	-
PSH72_RS21335 (PSH72_21330)	kdsB	4707968..4708732 (-)	765	WP_305502894.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PSH72_RS21340 (PSH72_21335)	-	4708729..4708914 (-)	186	WP_003179363.1	Trm112 family protein	-
PSH72_RS21345 (PSH72_21340)	lpxK	4708940..4709950 (-)	1011	WP_305502896.1	tetraacyldisaccharide 4'-kinase	-
PSH72_RS21350 (PSH72_21345)	-	4709950..4710378 (-)	429	WP_052964865.1	biopolymer transporter ExbD	-
PSH72_RS21355 (PSH72_21350)	exbB	4710375..4711010 (-)	636	WP_008067747.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PSH72_RS21360 (PSH72_21355)	comA	4711107..4713341 (-)	2235	WP_305502898.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PSH72_RS21365 (PSH72_21360)	-	4713478..4713999 (+)	522	WP_305446507.1	DUF2062 domain-containing protein	-
PSH72_RS21370 (PSH72_21365)	-	4714091..4714870 (-)	780	WP_305502900.1	ABC transporter permease	-
PSH72_RS21375 (PSH72_21370)	-	4714867..4715799 (-)	933	WP_305446509.1	ABC transporter ATP-binding protein	-
PSH72_RS21380 (PSH72_21375)	-	4715933..4716556 (-)	624	WP_305446510.1	glutathione S-transferase family protein	-
PSH72_RS21385 (PSH72_21380)	-	4716600..4717259 (-)	660	WP_305446511.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81506.76 Da
• Isoelectric Point: 10.3965

>NTDB_id=785506 PSH72_RS21360 WP_305502898.1 4711107..4713341(-) (comA) [Pseudomonas cucumis strain FP1962]
MRTGMMALALGLLALRFLPALPPVWLWLLLPVAGLMLLPFRTFPLAFFLFGFSWAGANAQWAMNDRLALKLDGETRWVVG
RVTGLPQQADEVVRFELTDSQSRRTKLPGHLRLAWYGGPPVNSGEHWRLAVKLKRPAGLLNPHGFDYDAWLLARHIGATG
TVKDGQRLREAQWAWRDGIRQRLQVVDAQGRTGALTALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLLAGVVYLL
IAGLARYGVWPKRLPWLPWACGLAFAAALGYGLLAGFEVPVRRACLMIGLVLLWRLRFRHLGAWWPLLLGLDGVLLLDPL
ASLQPGFWLSFAAVAVLILTFGGRLGPWRWWQTWTRAQWLIAIGLCPLLLVLGLPISLSGPLANLLAVPWVSLVVLPPAL
LGTMLLPVPYVGEGLLWLAGGLIDLLFKGLALIAGQLPAWIPVAVPLWVWALGTLGAFVLLLPRGVPLRPLGWPMLLLLV
FPPRHTLPEGMAEVWQLDVGQGLAILVRTRHHTLLYDAGPRFGDIDLGERVVLPSLRKLGVSSLDLMLISHADADHAGGA
RAVANAIPVKQVLSGDHLALPDQLHAEGCESGQQWAWDGVKFQLWQWPSASDSNQKSCVLQVEANGERLLLTGDIDAAAE
RALLDGPLAVRTDWLQAPHHGSRSSSSVALLSALQPKAVLISRGNGNSFGHPHPTVVARYQKRGVAIYDSAEQGAIRLQL
GRFRPPWTMLQERRFWRGPPLSSQ

Nucleotide

• Length: 2235 bp

>NTDB_id=785506 PSH72_RS21360 WP_305502898.1 4711107..4713341(-) (comA) [Pseudomonas cucumis strain FP1962]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGTCTGCTGGCCTTGCGTTTTTTACCGGCATTACCGCCGGTCTGGTTGTG
GCTGTTGTTACCGGTAGCGGGTTTGATGTTGCTGCCGTTTCGAACTTTTCCCTTGGCATTTTTTCTGTTCGGTTTCAGTT
GGGCGGGCGCGAATGCACAGTGGGCGATGAATGATCGCCTGGCGCTGAAGCTCGATGGCGAGACGCGCTGGGTCGTAGGT
CGTGTGACCGGGTTGCCGCAGCAGGCCGATGAGGTGGTGCGTTTCGAACTCACGGACAGTCAGTCCCGTCGCACCAAGCT
GCCTGGGCACCTGCGCCTGGCCTGGTATGGCGGGCCTCCCGTCAACAGCGGCGAACATTGGCGGCTGGCCGTCAAATTGA
AGCGTCCTGCCGGGTTGCTCAACCCGCATGGGTTCGATTACGACGCCTGGCTACTGGCCCGGCACATCGGCGCCACCGGA
ACCGTCAAGGATGGCCAGCGCCTGAGGGAGGCGCAGTGGGCCTGGCGCGACGGCATCCGTCAGCGTTTGCAGGTCGTGGA
TGCCCAGGGGCGAACGGGCGCGCTGACGGCGTTGGTGCTGGGGGATGGCGCCGGGCTGAGTCGTGAGGACTGGCAGGTGC
TGCAAGACACCGGCACCGTGCATCTGTTGGTGATTTCCGGGCAGCACATCGGCCTGCTGGCGGGGGTGGTGTATCTGCTG
ATTGCCGGATTGGCGCGTTATGGTGTGTGGCCCAAGCGCTTGCCGTGGCTGCCATGGGCGTGCGGGCTGGCGTTTGCGGC
GGCGCTCGGTTACGGGCTGCTGGCCGGCTTCGAGGTACCGGTGCGCCGGGCCTGCCTGATGATCGGTCTGGTGCTGTTGT
GGCGACTACGGTTTCGTCACCTCGGCGCATGGTGGCCGTTATTGCTGGGGCTTGACGGTGTTTTGCTGCTGGATCCGCTG
GCGAGCCTGCAACCGGGTTTCTGGTTGTCCTTTGCGGCGGTGGCGGTGCTGATTCTCACCTTCGGCGGGCGATTGGGTCC
GTGGCGTTGGTGGCAAACCTGGACTCGTGCCCAGTGGCTGATCGCGATCGGTTTGTGTCCGCTGCTGTTGGTGCTGGGGT
TGCCGATCAGTCTCAGTGGGCCACTGGCCAATTTGCTCGCAGTGCCCTGGGTCAGTCTGGTGGTCCTGCCGCCAGCTTTG
CTTGGGACGATGTTGTTGCCCGTTCCTTATGTGGGCGAAGGATTGCTGTGGCTGGCCGGCGGTCTGATCGATCTTTTGTT
CAAGGGGTTGGCGTTGATAGCGGGGCAATTGCCCGCATGGATACCAGTGGCGGTCCCGTTGTGGGTATGGGCGCTCGGCA
CGCTGGGCGCCTTTGTGCTGTTGCTGCCGCGAGGCGTGCCGTTGCGCCCGTTGGGTTGGCCGATGTTGCTGTTACTGGTT
TTTCCGCCCCGACACACGTTGCCTGAAGGCATGGCCGAGGTTTGGCAGCTGGATGTCGGTCAGGGTTTGGCGATCCTGGT
GCGTACCCGCCATCACACCTTGCTGTATGACGCCGGGCCACGGTTCGGCGATATCGACCTGGGTGAGCGGGTGGTGCTGC
CATCATTGCGCAAACTGGGTGTGAGCAGCCTTGATCTGATGCTGATCAGCCACGCCGATGCCGATCACGCCGGCGGTGCG
CGAGCAGTTGCCAACGCAATACCGGTGAAGCAAGTACTCAGTGGCGATCACTTGGCCCTGCCAGATCAACTCCACGCCGA
GGGCTGCGAGAGTGGTCAGCAATGGGCCTGGGACGGCGTGAAGTTTCAACTCTGGCAGTGGCCGTCAGCCAGCGACAGCA
ATCAGAAATCCTGCGTGCTACAGGTTGAAGCCAACGGCGAGCGCTTGCTGCTGACCGGCGACATCGATGCCGCAGCCGAG
CGGGCGCTGCTCGACGGTCCATTGGCGGTGCGGACGGATTGGTTGCAGGCCCCGCACCATGGCAGTCGCAGTTCGTCTTC
GGTGGCATTGCTCAGCGCCTTGCAACCCAAAGCGGTATTGATCTCCCGTGGTAACGGCAATTCTTTCGGCCATCCCCATC
CCACGGTTGTGGCGCGCTATCAAAAACGCGGTGTGGCGATCTACGACAGCGCCGAGCAAGGTGCCATTCGTCTGCAACTG
GGACGCTTCAGGCCGCCGTGGACGATGCTTCAAGAACGGCGCTTCTGGCGCGGTCCGCCACTATCCAGCCAGTAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.056	96.102	0.616
comA	Ralstonia pseudosolanacearum GMI1000	33.537	100	0.37