Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH72_RS21355 Genome accession   NZ_CP117453
Coordinates   4710375..4711010 (-) Length   211 a.a.
NCBI ID   WP_008067747.1    Uniprot ID   A0A423HTU9
Organism   Pseudomonas cucumis strain FP1962     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4705375..4716010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH72_RS21320 (PSH72_21315) - 4705785..4706255 (-) 471 WP_305502892.1 (2Fe-2S)-binding protein -
  PSH72_RS21325 (PSH72_21320) murB 4706488..4707507 (-) 1020 WP_305446502.1 UDP-N-acetylmuramate dehydrogenase -
  PSH72_RS21330 (PSH72_21325) - 4707504..4707968 (-) 465 WP_305446503.1 low molecular weight protein-tyrosine-phosphatase -
  PSH72_RS21335 (PSH72_21330) kdsB 4707968..4708732 (-) 765 WP_305502894.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH72_RS21340 (PSH72_21335) - 4708729..4708914 (-) 186 WP_003179363.1 Trm112 family protein -
  PSH72_RS21345 (PSH72_21340) lpxK 4708940..4709950 (-) 1011 WP_305502896.1 tetraacyldisaccharide 4'-kinase -
  PSH72_RS21350 (PSH72_21345) - 4709950..4710378 (-) 429 WP_052964865.1 biopolymer transporter ExbD -
  PSH72_RS21355 (PSH72_21350) exbB 4710375..4711010 (-) 636 WP_008067747.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH72_RS21360 (PSH72_21355) comA 4711107..4713341 (-) 2235 WP_305502898.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH72_RS21365 (PSH72_21360) - 4713478..4713999 (+) 522 WP_305446507.1 DUF2062 domain-containing protein -
  PSH72_RS21370 (PSH72_21365) - 4714091..4714870 (-) 780 WP_305502900.1 ABC transporter permease -
  PSH72_RS21375 (PSH72_21370) - 4714867..4715799 (-) 933 WP_305446509.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22941.13 Da        Isoelectric Point: 6.8771

>NTDB_id=785505 PSH72_RS21355 WP_008067747.1 4710375..4711010(-) (exbB) [Pseudomonas cucumis strain FP1962]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMGTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=785505 PSH72_RS21355 WP_008067747.1 4710375..4711010(-) (exbB) [Pseudomonas cucumis strain FP1962]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTTTGAGCTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGTCTCTGGACCCTGCGTGCCAGCCGCGTGACCCCGGAGCACTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AACAACTCAATAAAGAAAAGCTCAAGGAACTGCGCGCCAACTCTCCGTTGGGCGAGATCCTGGCCGCCGGCCTGGCGAAT
TCCAGGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTGATTCATGAGCTCGAACGCTACAT
CAACGCCCTCGGCACCATTGCCGCCATGGCCCCGTTGTTGGGATTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GTGCGTTCATGGGCACGGGCATGGGCACCAACGCCTCAGTGCTGGCCGGTGGTATTTCCAAAGCGCTGATCACCACCGCC
GCAGGCCTGATGGTCGGTATCCCGGCCGTGTTCTTCCACCGTTTCCTGCAACGCCGGATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTCGAGGTCGTGCAGGGTGACCGCGACGTGGATCTGGCTGAGGGTAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A423HTU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853