Detailed information NTG0785473

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PSH78_RS04335
• Genome accession: NZ_CP117452
• Coordinates: 926753..928099 (-)
• Length: 448 a.a.
• NCBI ID: WP_305498732.1
• Uniprot ID: -
• Organism: Pseudomonas sp. FP198
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 921753..933099

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH78_RS04320 (PSH78_04320)	-	921964..925065 (+)	3102	WP_305498728.1	pilus assembly protein	-
PSH78_RS04325 (PSH78_04325)	-	925074..925475 (+)	402	WP_305498730.1	type IV pilin protein	-
PSH78_RS04330 (PSH78_04330)	thiO	925529..926631 (+)	1103	Protein_857	glycine oxidase ThiO	-
PSH78_RS04335 (PSH78_04335)	pilR	926753..928099 (-)	1347	WP_305498732.1	sigma-54 dependent transcriptional regulator	Regulator
PSH78_RS04340 (PSH78_04340)	pilS	928096..929685 (-)	1590	WP_305498733.1	nitrogen regulation protein NR(II)	Regulator
PSH78_RS04345 (PSH78_04345)	-	929675..929908 (-)	234	WP_305498734.1	PP0621 family protein	-
PSH78_RS04350 (PSH78_04350)	-	930033..931049 (-)	1017	WP_305498735.1	outer membrane protein assembly factor BamD	-
PSH78_RS04355 (PSH78_04355)	rluD	931200..932162 (+)	963	WP_003205696.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PSH78_RS04360 (PSH78_04360)	pgeF	932159..932884 (+)	726	WP_305498737.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50090.58 Da
• Isoelectric Point: 6.3560

>NTDB_id=785473 PSH78_RS04335 WP_305498732.1 926753..928099(-) (pilR) [Pseudomonas sp. FP198]
MNTRSRQRILIVDDEPDIRELLEITLGRMKLDTRSAKNLAEAQALLAGETFDLCLTDMRLPDGTGLELVQHIQQRIPQLP
VAMITAYGSLEVAIDALKAGAFDFLTKPVDLGRLRELIGSALRLSPGAAPSTTVERCLLGDSPPMRSVRRQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRYNQGFVPVNCGAIPTELMESEFFGHRKGSFTGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLGAEVAASRFRQDLYYRLNVIELRVPPLRERREDIELLA
NHMLQRLAINACSPAVTLHPHALKALQNYRFPGNVRELENMLERAYTLCEHQQIEADDLRLAEHNGAGEAGNPDLMQVDN
LEDYLEDVERKVILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=785473 PSH78_RS04335 WP_305498732.1 926753..928099(-) (pilR) [Pseudomonas sp. FP198]
TTGAATACACGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGAAATCACCCTGGG
AAGGATGAAACTCGACACCCGCAGCGCCAAGAACCTCGCCGAGGCCCAAGCCCTGCTGGCAGGTGAAACCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAACACATCCAGCAACGTATTCCTCAACTGCCG
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAGTCGCTATCGACGCGCTCAAGGCCGGCGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTCGGGCGGCTGCGGGAGCTGATCGGCAGCGCCTTGCGCCTGTCGCCGGGTGCTGCGCCGAGTACGACCG
TCGAGCGCTGCCTGTTGGGCGACTCGCCACCCATGCGCAGCGTGCGCCGACAGATTGAAAAACTCGCCCGCAGCCAGGCG
CCGGTCTACATCAGCGGCGAATCGGGCTGCGGCAAGGAACTGGTGGCGCGCCTGATTCATGAACAAGGCCCTCGCTACAA
CCAGGGGTTTGTGCCGGTCAATTGTGGGGCCATTCCAACGGAGTTGATGGAAAGCGAGTTTTTCGGCCATCGAAAAGGCA
GCTTCACCGGTGCCATCGAAGACAAGCCCGGCCTGTTCCAGGCGGCTCACGGCGGGACCCTGTTCCTTGATGAAGTCGCC
GACCTGCCACTGGCGATGCAGGTCAAGCTGCTGCGTGCCATCCAGGAAAAAGCCGTGCGCGCGGTGGGCGGGCAACAGGA
GGAAGTGGTGGATGTGCGAATCCTCTGCGCCACCCACAAGGACCTCGGCGCAGAAGTCGCCGCCAGTCGCTTTCGCCAGG
ACTTGTATTACCGGCTGAATGTCATCGAACTGCGCGTCCCACCCTTGCGTGAACGCCGGGAAGACATCGAGCTGCTGGCC
AACCACATGCTCCAGCGCCTGGCCATCAACGCCTGCAGCCCAGCGGTGACGCTCCATCCGCACGCCCTCAAAGCGCTGCA
GAACTACCGCTTCCCGGGCAACGTGCGAGAACTGGAGAACATGCTCGAACGGGCCTACACCCTGTGCGAGCACCAGCAGA
TCGAGGCCGATGACTTGCGTCTCGCCGAACACAACGGGGCTGGCGAGGCGGGCAATCCTGATCTGATGCAGGTCGACAAT
CTGGAAGATTATCTGGAGGACGTCGAACGCAAGGTCATCCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACCGCAGC
GGCGCAGAGATTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGTTGGGGTTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Response regulator receiver domain (Response_reg) (9-118)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.054	99.107	0.783
pilR	Acinetobacter baumannii strain A118	48.584	100	0.498