Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PSH78_RS04340 Genome accession   NZ_CP117452
Coordinates   928096..929685 (-) Length   529 a.a.
NCBI ID   WP_305498733.1    Uniprot ID   -
Organism   Pseudomonas sp. FP198     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 923096..934685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH78_RS04325 (PSH78_04325) - 925074..925475 (+) 402 WP_305498730.1 type IV pilin protein -
  PSH78_RS04330 (PSH78_04330) thiO 925529..926631 (+) 1103 Protein_857 glycine oxidase ThiO -
  PSH78_RS04335 (PSH78_04335) pilR 926753..928099 (-) 1347 WP_305498732.1 sigma-54 dependent transcriptional regulator Regulator
  PSH78_RS04340 (PSH78_04340) pilS 928096..929685 (-) 1590 WP_305498733.1 nitrogen regulation protein NR(II) Regulator
  PSH78_RS04345 (PSH78_04345) - 929675..929908 (-) 234 WP_305498734.1 PP0621 family protein -
  PSH78_RS04350 (PSH78_04350) - 930033..931049 (-) 1017 WP_305498735.1 outer membrane protein assembly factor BamD -
  PSH78_RS04355 (PSH78_04355) rluD 931200..932162 (+) 963 WP_003205696.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSH78_RS04360 (PSH78_04360) pgeF 932159..932884 (+) 726 WP_305498737.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58648.47 Da        Isoelectric Point: 7.3783

>NTDB_id=785474 PSH78_RS04340 WP_305498733.1 928096..929685(-) (pilS) [Pseudomonas sp. FP198]
MIAEASRPRVKQAQRLLRLYHLYRLSIGITLVLLITSNMDNRLLEFANDDLLRSGSWLYLVLNILLVVFLENTRRPARLF
GLALTDVLLLSWLFFVAGGAPSAIGNLIIVSVAIGNTLLKGRIGLLIAAVATLGIVGSTFVLGLSDASRPSSYLQAGTLG
ALCFAAALLVQGLTRRLEASETLAEQRASEVLSLEALNALILQRMRTGILVLDHQHRVQLANESALNLLGMHDLIGQRID
DYSSALVERLQSWRNNPSLRAQSLTISGTGLTLQPSFIALGPQDQQQILVFLEDLAQVAQHAQQLKLASLGRLTAGISHE
IRNPLGAISHAAQLLGESEELNNADRRLTQIIQDHSLRMNRVIENVLQLSRRQQTSPQRLDLRTWLEQFVLRTRENAAEN
QQLHLSIDPGDYITLMDPDQLAQVLDNLLRNAWRHSAMVHEQAEAWLKLFIDPHSQLATLDIIDNGPGVTPEQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=785474 PSH78_RS04340 WP_305498733.1 928096..929685(-) (pilS) [Pseudomonas sp. FP198]
GTGATCGCTGAGGCCTCGCGTCCCCGCGTCAAACAGGCGCAGCGTCTGCTGCGCCTGTATCACCTGTACCGCCTGAGCAT
CGGCATCACCCTGGTGCTGCTGATCACCAGCAACATGGACAACCGGCTGCTGGAGTTCGCCAACGACGACCTGCTGCGCA
GCGGCAGCTGGTTGTATCTGGTACTGAACATCCTGCTGGTGGTGTTCCTTGAAAATACGCGTCGCCCTGCCCGGCTGTTC
GGGCTGGCACTCACCGACGTATTGCTGCTGTCGTGGCTGTTCTTCGTCGCGGGTGGCGCCCCCAGCGCCATCGGCAACCT
GATCATTGTCTCGGTAGCCATCGGCAACACCTTGCTGAAAGGGCGCATCGGCCTGCTGATCGCCGCCGTTGCCACCCTTG
GCATCGTCGGCTCGACATTTGTCCTCGGCCTCAGCGACGCGAGCCGCCCCAGCAGCTATCTACAGGCGGGCACCCTGGGC
GCCTTGTGTTTCGCCGCCGCTTTGCTGGTGCAAGGCCTGACCCGACGCCTGGAAGCCAGCGAAACCCTGGCCGAGCAACG
GGCCAGCGAAGTGCTCAGCCTCGAAGCGCTCAACGCCTTGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTTGATC
ACCAGCACCGGGTGCAGCTGGCCAACGAAAGCGCCTTGAACCTGCTGGGCATGCACGACCTGATCGGCCAGCGGATAGAC
GATTATTCCAGCGCCTTGGTCGAACGGCTGCAATCGTGGCGGAACAATCCCAGCCTGCGCGCGCAAAGCCTGACCATCAG
CGGCACCGGCCTGACGCTGCAACCCAGCTTCATCGCCCTCGGCCCACAGGATCAGCAGCAGATCCTGGTATTTCTCGAAG
ACCTGGCCCAAGTGGCCCAACACGCCCAGCAGCTGAAACTCGCCTCCCTCGGGCGCCTCACCGCCGGTATTTCCCATGAA
ATCCGCAACCCTCTGGGCGCCATCAGCCACGCCGCGCAATTGCTCGGTGAATCCGAGGAACTGAACAACGCCGACCGACG
TCTGACGCAGATTATTCAAGACCACTCCCTACGAATGAATCGCGTCATCGAAAACGTCCTGCAGCTGTCCCGCCGCCAGC
AAACCTCGCCGCAACGCCTGGATTTACGCACATGGCTTGAGCAATTCGTCCTGCGGACCCGCGAAAACGCGGCCGAAAAC
CAGCAATTGCACCTGAGCATCGACCCGGGCGACTACATCACGCTCATGGACCCCGACCAACTGGCCCAGGTGCTCGACAA
TCTGCTGCGCAACGCCTGGCGTCATAGCGCAATGGTCCATGAACAGGCCGAGGCCTGGTTGAAGCTCTTCATCGACCCGC
ACAGTCAGTTGGCCACGCTGGACATCATCGACAACGGCCCTGGCGTAACGCCGGAGCAGCAGGCGCACTTGTTCGAACCT
TTCTTCACCACCAGCAGCCAGGGCACCGGCCTCGGCCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAATCACGCCAAGGCGGCGGTTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

58.712

99.811

0.586