Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PSH92_RS24245 Genome accession   NZ_CP117451
Coordinates   5527957..5529303 (+) Length   448 a.a.
NCBI ID   WP_305468544.1    Uniprot ID   -
Organism   Pseudomonas beijingensis strain FP2034     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5522957..5534303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH92_RS24220 (PSH92_24215) pgeF 5523171..5523896 (-) 726 WP_305468541.1 peptidoglycan editing factor PgeF -
  PSH92_RS24225 (PSH92_24220) rluD 5523893..5524855 (-) 963 WP_003205696.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSH92_RS24230 (PSH92_24225) - 5525006..5526022 (+) 1017 WP_058546854.1 outer membrane protein assembly factor BamD -
  PSH92_RS24235 (PSH92_24230) - 5526148..5526381 (+) 234 WP_122564926.1 PP0621 family protein -
  PSH92_RS24240 (PSH92_24235) pilS 5526371..5527960 (+) 1590 WP_305468543.1 ATP-binding protein Regulator
  PSH92_RS24245 (PSH92_24240) pilR 5527957..5529303 (+) 1347 WP_305468544.1 sigma-54 dependent transcriptional regulator Regulator
  PSH92_RS24250 (PSH92_24245) - 5529479..5529844 (-) 366 WP_305468545.1 DUF6124 family protein -
  PSH92_RS24255 (PSH92_24250) - 5530928..5531092 (-) 165 WP_305471304.1 hypothetical protein -
  PSH92_RS24260 (PSH92_24255) thiO 5531346..5532446 (-) 1101 WP_305468547.1 glycine oxidase ThiO -
  PSH92_RS24265 (PSH92_24260) - 5532504..5532905 (-) 402 WP_305468548.1 type IV pilin protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49959.38 Da        Isoelectric Point: 5.9869

>NTDB_id=785454 PSH92_RS24245 WP_305468544.1 5527957..5529303(+) (pilR) [Pseudomonas beijingensis strain FP2034]
MNNRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQALLAGDAFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPAVATPTSTIERCLLGDSPPMRSVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRANQGFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIEPLA
NHMLQRLAANTGSPAVKLHPQALAALQNYRFPGNVRELENMLERAYTLCEQQLIEADDLRLAEGNNAGEAGKPDLMQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=785454 PSH92_RS24245 WP_305468544.1 5527957..5529303(+) (pilR) [Pseudomonas beijingensis strain FP2034]
TTGAACAATCGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTGCCGAGGCCCAAGCCCTGCTGGCGGGAGATGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGTACTGGCTTGGAACTGGTGCAGCACATCCAGCAACGTTATCCACAACTGCCC
GTGGCGATGATCACCGCCTACGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGCGCCTTCGATTTCCTGACCAA
GCCGGTCGACCTGGGGCGGCTGCGGGAACTGGTCACCAGTGCCCTGCGCCTGCCAGCCGTCGCCACACCGACCAGCACCA
TCGAGCGATGCCTTCTGGGCGACTCGCCGCCGATGCGCAGCGTGCGCAAACAGATCGAAAAACTCGCCCGCAGCCAGGCG
CCGGTGTACATCAGTGGGGAGTCGGGTTGCGGCAAGGAACTGGTCGCCCGGCTGATCCACGAACAAGGCCCCCGTGCCAA
CCAGGGCTTTGTGCCGGTCAACTGTGGGGCGATTCCCACGGAACTGATGGAAAGCGAGTTCTTTGGCCATCGCAAAGGCA
GCTTCAGCGGCGCCATCGAAGACAAGCCCGGACTGTTCCAGGCCGCCCATGGCGGGACCTTGTTCCTCGATGAAGTGGCC
GACCTGCCTCTGGCGATGCAGGTCAAACTGTTGCGGGCGATCCAGGAAAAAGCCGTGCGTGCCGTGGGCGGCCAGCAGGA
AGAAGTGGTGGATGTACGCATCCTCTGCGCCACCCATAAGGATCTGGACGCCGAAGTCGCCGCCGGGCGCTTTCGCCAGG
ATCTGTATTACCGGCTGAACGTCATCGAACTGCGCGTGCCGCCCTTGCGCGAACGCCGCGAAGACATCGAACCGCTGGCC
AATCATATGCTCCAGCGCTTGGCGGCCAACACCGGCAGCCCCGCAGTAAAACTCCATCCCCAGGCCCTGGCCGCGCTGCA
AAACTACCGCTTCCCGGGCAATGTGCGGGAGCTGGAGAACATGCTCGAACGGGCCTACACCCTGTGCGAACAACAACTGA
TCGAAGCCGACGACCTGCGCCTGGCCGAAGGCAATAATGCCGGCGAGGCGGGCAAACCCGATTTGATGCAGGTCGACAAT
CTGGAGGACTACCTGGAAGACGTCGAGCGTAAGCTGATCCTTCAAGCACTGGAGGAAACCCGCTGGAACCGTACGGCGGC
GGCACAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAACTTGGGCTGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Response regulator receiver domain (Response_reg)

(9-118)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.604

99.107

0.779
  pilR Acinetobacter baumannii strain A118

49.237

100

0.504