Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PSH92_RS24240 Genome accession   NZ_CP117451
Coordinates   5526371..5527960 (+) Length   529 a.a.
NCBI ID   WP_305468543.1    Uniprot ID   -
Organism   Pseudomonas beijingensis strain FP2034     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5521371..5532960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH92_RS24220 (PSH92_24215) pgeF 5523171..5523896 (-) 726 WP_305468541.1 peptidoglycan editing factor PgeF -
  PSH92_RS24225 (PSH92_24220) rluD 5523893..5524855 (-) 963 WP_003205696.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSH92_RS24230 (PSH92_24225) - 5525006..5526022 (+) 1017 WP_058546854.1 outer membrane protein assembly factor BamD -
  PSH92_RS24235 (PSH92_24230) - 5526148..5526381 (+) 234 WP_122564926.1 PP0621 family protein -
  PSH92_RS24240 (PSH92_24235) pilS 5526371..5527960 (+) 1590 WP_305468543.1 ATP-binding protein Regulator
  PSH92_RS24245 (PSH92_24240) pilR 5527957..5529303 (+) 1347 WP_305468544.1 sigma-54 dependent transcriptional regulator Regulator
  PSH92_RS24250 (PSH92_24245) - 5529479..5529844 (-) 366 WP_305468545.1 DUF6124 family protein -
  PSH92_RS24255 (PSH92_24250) - 5530928..5531092 (-) 165 WP_305471304.1 hypothetical protein -
  PSH92_RS24260 (PSH92_24255) thiO 5531346..5532446 (-) 1101 WP_305468547.1 glycine oxidase ThiO -
  PSH92_RS24265 (PSH92_24260) - 5532504..5532905 (-) 402 WP_305468548.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58871.55 Da        Isoelectric Point: 7.4039

>NTDB_id=785453 PSH92_RS24240 WP_305468543.1 5526371..5527960(+) (pilS) [Pseudomonas beijingensis strain FP2034]
MSAEASSPRVKQTQRLLRLYHLYRLSIGITLVLLISSNMDNRLLEFANDDLLRSGSWLYLVLNILLVVFLENTRRPARLF
GLALTDVLLLSWLFFAAGGVPSAIGNLIIVSVAIGNTLLRGRIGLLIAAVATLGIVGSSFFLGLSDSNRPSSYLQAGTLG
ALCFAAALLVQGLTRRLEASETLAEQRASEVVGLEALNALILQRMRTGILVLDRERRVQLANESALNLLGMHDLVGQQLD
DYSTALVERLQLWRNNPSLRPSSLTVTGTGLTLQPSFIALGHNDQHQILVFLEDLAQVAQHAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNDADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTTPQRLDLRTWLDQFVRQARESMAEH
QRLHLSIDPGDYTTLMDPDQLTQVLDNLLRNAWRHSAMAHEQAEAWLKLFIDPHSQLSTLDIIDNGPGVTPEQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=785453 PSH92_RS24240 WP_305468543.1 5526371..5527960(+) (pilS) [Pseudomonas beijingensis strain FP2034]
GTGAGCGCTGAGGCCTCAAGCCCACGCGTCAAACAGACGCAGCGCCTGCTGCGCCTCTATCACCTGTACCGCCTGAGTAT
CGGCATCACCCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGGAGTTCGCCAACGACGACCTGCTGCGCA
GCGGTAGCTGGTTGTACCTGGTGCTGAACATCCTGCTGGTGGTGTTCCTTGAGAACACCCGACGCCCTGCCCGACTGTTC
GGCCTGGCCCTCACCGACGTGCTCTTGCTTTCATGGCTGTTTTTCGCAGCCGGCGGTGTGCCCAGTGCCATCGGCAACCT
GATCATCGTCTCGGTGGCCATCGGTAACACGCTGTTGCGCGGCAGGATCGGCCTGTTGATCGCGGCCGTCGCCACCCTCG
GCATCGTCGGTTCGAGTTTTTTTCTTGGCTTGAGCGACTCGAACCGTCCCAGCAGCTATTTGCAGGCCGGTACCCTCGGG
GCGCTGTGTTTTGCCGCCGCGCTGCTGGTGCAAGGCCTGACCCGACGCTTGGAAGCCAGCGAAACCCTGGCCGAGCAACG
GGCCAGCGAAGTGGTCGGCCTGGAAGCGCTCAACGCCCTGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTCGACC
GTGAGCGTCGGGTCCAGTTGGCCAACGAAAGCGCATTGAATCTGCTGGGCATGCACGATCTGGTCGGCCAGCAGCTCGAC
GATTACTCCACTGCCCTGGTCGAACGCCTGCAATTATGGCGAAACAACCCCAGCCTGCGCCCGTCCAGCCTGACCGTTAC
CGGCACGGGCCTGACCCTGCAACCGAGCTTCATCGCCCTGGGCCACAACGACCAGCATCAAATCCTGGTGTTCCTCGAAG
ACCTGGCCCAGGTTGCCCAGCATGCCCAGCAGCTCAAGCTCGCCTCCCTGGGGCGCCTGACCGCCGGTATCGCTCATGAA
ATCCGCAACCCCTTGGGCGCCATCAGCCACGCGGCGCAATTGCTGCGCGAATCCGAGGAACTGAACGACGCGGATCGGCG
TCTGACGCAGATTATTCAAGATCACTCCCAACGAATGAATCGCGTCATTGAAAACGTTCTGCAGCTGTCTCGTCGCCAGC
AAACCACACCCCAGCGTCTCGACCTGCGCACCTGGCTCGACCAATTCGTCCGGCAGGCCCGCGAAAGCATGGCCGAACAC
CAGCGCTTGCACCTGAGCATCGACCCGGGGGACTACACCACGCTGATGGACCCCGACCAGCTCACCCAGGTACTCGACAA
CCTGCTGCGCAACGCCTGGCGCCACAGCGCAATGGCCCATGAGCAGGCCGAGGCCTGGTTGAAACTGTTCATCGACCCCC
ACAGCCAGCTGTCGACCTTGGACATCATCGACAACGGCCCCGGTGTAACGCCCGAGCAGCAGGCGCATTTGTTCGAACCT
TTCTTCACCACCAGCAGCCAGGGCACCGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGTTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.038

99.811

0.599