Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSH67_RS17470 Genome accession   NZ_CP117450
Coordinates   3833943..3836168 (-) Length   741 a.a.
NCBI ID   WP_305386917.1    Uniprot ID   -
Organism   Pseudomonas lurida strain FP2043     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3828943..3841168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH67_RS17435 (PSH67_17430) murB 3829325..3830344 (-) 1020 WP_034106772.1 UDP-N-acetylmuramate dehydrogenase -
  PSH67_RS17440 (PSH67_17435) - 3830341..3830805 (-) 465 WP_034106774.1 low molecular weight protein-tyrosine-phosphatase -
  PSH67_RS17445 (PSH67_17440) kdsB 3830805..3831569 (-) 765 WP_069077617.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH67_RS17450 (PSH67_17445) - 3831566..3831751 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH67_RS17455 (PSH67_17450) lpxK 3831776..3832786 (-) 1011 WP_305386915.1 tetraacyldisaccharide 4'-kinase -
  PSH67_RS17460 (PSH67_17455) - 3832786..3833214 (-) 429 WP_034106779.1 biopolymer transporter ExbD -
  PSH67_RS17465 (PSH67_17460) exbB 3833211..3833846 (-) 636 WP_012724911.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH67_RS17470 (PSH67_17465) comA 3833943..3836168 (-) 2226 WP_305386917.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH67_RS17475 (PSH67_17470) - 3836304..3836819 (+) 516 WP_034106781.1 DUF2062 domain-containing protein -
  PSH67_RS17480 (PSH67_17475) - 3836816..3838186 (-) 1371 WP_305386919.1 sensor histidine kinase -
  PSH67_RS17485 (PSH67_17480) - 3838173..3838901 (-) 729 WP_034106783.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80273.36 Da        Isoelectric Point: 10.9345

>NTDB_id=785419 PSH67_RS17470 WP_305386917.1 3833943..3836168(-) (comA) [Pseudomonas lurida strain FP2043]
MRTGMVALALGLLSLRFLPALPATGWLIALLVLALMMLPFRTYPLAFFLLGLSWACVSAQWALDDRLRPALDGQTRWVEG
RVTGLPQQTGQGVRFVLTDSRSRNARLPKRIRVSWRGGPPVRSGERWRLAITLKQPAGLLNFHGFDQEAWLLAQRIGATG
SVKDGERLAPAHNAWRDSVRQRLMAVDAQGREAGLTALVLGDGSGLAAADWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IAGLARYGCWPRTWPWLPWACGLAFSAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGLWWPLLLALNGVLVLEPL
ASLQPGFWLSFAAVAVLILAFGGRLGPWSLWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPVANLVAVPWISLVVLPLAL
LGTALLPLPFVGEGLLWLAGGALEGLFEGLAWLAAQVPAWIPAEVPMGYWLVSLFGAVLLLLPKGVPFRVLGWPMLMLAV
FAPRELVPHGQVDVVQLDVGQGQALILRTRHHALLYDAGPRSGTFDLGARVVLPSLRKLGVGALDLMLLSHADADHAGGA
TAIAKGLPIKRVVGGETEGLPALLGTQPCISGERWTWDGVTFELWQWPGAITGNPKSCVLQVQANGERLLLTGDIDRAAE
QAMLGSPLAVPTHWLQAPHHGSRSSSSWAFLERLAPQSVLISRGRGNAFGHPHPQVMARYQRLGSQVYDSAEHGAVRLQL
GAFAPPVVARSQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=785419 PSH67_RS17470 WP_305386917.1 3833943..3836168(-) (comA) [Pseudomonas lurida strain FP2043]
ATGAGGACAGGGATGGTCGCGCTGGCGCTGGGGTTGCTGAGCCTGCGCTTTTTACCGGCATTGCCGGCTACCGGCTGGCT
GATCGCCTTATTGGTGCTGGCATTGATGATGTTGCCGTTTCGCACTTACCCGTTGGCGTTTTTCCTGCTGGGGCTGAGTT
GGGCCTGCGTCAGCGCGCAGTGGGCGTTGGATGATCGCCTGAGGCCGGCACTGGATGGCCAGACACGTTGGGTGGAAGGG
CGGGTCACCGGGCTGCCGCAACAGACGGGTCAGGGCGTGCGTTTTGTCCTGACCGACAGCCGGTCGCGCAATGCCCGGTT
GCCCAAACGTATCCGGGTGTCCTGGCGAGGCGGGCCACCGGTCCGCAGTGGTGAGCGCTGGCGCCTGGCAATCACCCTCA
AGCAACCGGCCGGGCTGTTGAATTTTCACGGATTTGACCAGGAAGCCTGGCTGCTGGCCCAGCGCATCGGCGCCACCGGC
TCGGTGAAGGACGGCGAGCGCCTGGCACCGGCCCACAACGCCTGGCGCGACAGTGTGCGCCAGCGCCTGATGGCGGTGGA
TGCCCAGGGCCGGGAAGCCGGCCTGACTGCCCTGGTGCTGGGGGATGGCTCCGGGTTGGCCGCTGCCGATTGGCAGGTGT
TGCAGGACACGGGCACCGTGCATCTGCTGGTCATCTCCGGCCAACACATCGGTTTGTTGGCGGGCTTGATCTATGGGTTG
ATCGCCGGGCTGGCGCGCTACGGCTGCTGGCCCCGAACCTGGCCGTGGCTGCCATGGGCGTGTGGCCTGGCATTCAGCGC
CGCGCTGGGCTACGGCTTGCTGGCAGGGTTTGGCGTGCCGGTGCAGCGTGCCTGCGTGATGGTCGGCCTGGTGTTGTTGT
GGCGGTTGCGCTTCCGGCATCTGGGGCTCTGGTGGCCGCTGCTGCTGGCACTCAATGGGGTGCTGGTCCTGGAACCCTTG
GCCAGCCTGCAGCCGGGCTTCTGGCTGTCGTTTGCGGCGGTAGCGGTATTGATCCTGGCGTTCGGTGGACGACTGGGGCC
ATGGAGCCTGTGGCAGGCGTGGACCCGGCCGCAGTGGTTGATTGCCATTGGGTTGTTTCCGGTGTTGCTGGTGCTGGGGC
TGCCTATCAGCCTGAGCGCGCCGGTCGCTAACCTGGTCGCGGTGCCGTGGATCAGCCTGGTGGTGTTGCCACTGGCGTTG
CTGGGGACGGCGTTGCTGCCGTTGCCGTTTGTGGGGGAAGGATTGCTCTGGCTGGCGGGCGGTGCGCTGGAGGGTTTGTT
CGAGGGCTTGGCGTGGCTGGCCGCGCAGGTGCCGGCCTGGATCCCGGCCGAAGTGCCGATGGGCTATTGGTTGGTGAGCC
TGTTCGGTGCCGTGTTGCTCCTGCTGCCCAAGGGCGTGCCGTTTCGCGTGCTGGGCTGGCCGATGCTGATGCTGGCCGTG
TTTGCGCCACGCGAACTGGTTCCCCATGGCCAGGTAGACGTGGTGCAATTGGATGTAGGGCAGGGGCAGGCGTTGATCTT
GCGTACCCGTCACCATGCCTTGCTGTATGACGCCGGCCCGCGCTCCGGAACCTTTGACCTGGGCGCGCGCGTGGTGCTGC
CGTCGCTGCGAAAACTTGGGGTAGGGGCCTTGGATCTGATGCTGCTCAGCCATGCCGACGCCGATCATGCCGGCGGCGCG
ACGGCGATAGCCAAGGGCCTGCCGATCAAGCGCGTGGTGGGCGGGGAAACCGAGGGTCTGCCGGCGCTGCTCGGCACCCA
GCCGTGCATCAGTGGCGAGCGCTGGACCTGGGACGGTGTCACGTTCGAACTCTGGCAATGGCCTGGTGCCATCACCGGTA
ACCCGAAGTCCTGCGTGTTGCAGGTGCAGGCCAATGGCGAGCGCCTGTTGCTGACCGGTGACATTGACCGCGCCGCCGAA
CAGGCCATGCTCGGTTCACCGCTGGCGGTGCCCACTCATTGGTTGCAGGCGCCACACCATGGCAGTCGCAGTTCTTCATC
CTGGGCGTTCCTGGAGCGCCTTGCCCCGCAGTCCGTGCTTATTTCACGGGGGCGGGGCAATGCGTTCGGCCATCCCCATC
CGCAGGTGATGGCGCGTTACCAGCGGTTGGGCAGCCAGGTGTATGACAGTGCCGAGCACGGGGCCGTGCGCCTGCAACTC
GGGGCTTTCGCGCCGCCGGTTGTTGCGCGCAGTCAACGCAGGTTCTGGCGCGAGCGGTTACCGTAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-671)

Competence protein (Competence)

(198-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.694

97.166

0.59
  comA Ralstonia pseudosolanacearum GMI1000

35.081

100

0.379