Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH67_RS17465 Genome accession   NZ_CP117450
Coordinates   3833211..3833846 (-) Length   211 a.a.
NCBI ID   WP_012724911.1    Uniprot ID   A0A855QI08
Organism   Pseudomonas lurida strain FP2043     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3828211..3838846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH67_RS17430 (PSH67_17425) - 3828572..3829243 (+) 672 WP_003174664.1 Bax inhibitor-1/YccA family protein -
  PSH67_RS17435 (PSH67_17430) murB 3829325..3830344 (-) 1020 WP_034106772.1 UDP-N-acetylmuramate dehydrogenase -
  PSH67_RS17440 (PSH67_17435) - 3830341..3830805 (-) 465 WP_034106774.1 low molecular weight protein-tyrosine-phosphatase -
  PSH67_RS17445 (PSH67_17440) kdsB 3830805..3831569 (-) 765 WP_069077617.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH67_RS17450 (PSH67_17445) - 3831566..3831751 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH67_RS17455 (PSH67_17450) lpxK 3831776..3832786 (-) 1011 WP_305386915.1 tetraacyldisaccharide 4'-kinase -
  PSH67_RS17460 (PSH67_17455) - 3832786..3833214 (-) 429 WP_034106779.1 biopolymer transporter ExbD -
  PSH67_RS17465 (PSH67_17460) exbB 3833211..3833846 (-) 636 WP_012724911.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH67_RS17470 (PSH67_17465) comA 3833943..3836168 (-) 2226 WP_305386917.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH67_RS17475 (PSH67_17470) - 3836304..3836819 (+) 516 WP_034106781.1 DUF2062 domain-containing protein -
  PSH67_RS17480 (PSH67_17475) - 3836816..3838186 (-) 1371 WP_305386919.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22875.02 Da        Isoelectric Point: 7.3613

>NTDB_id=785418 PSH67_RS17465 WP_012724911.1 3833211..3833846(-) (exbB) [Pseudomonas lurida strain FP2043]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWSWIKNKQLDKDKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=785418 PSH67_RS17465 WP_012724911.1 3833211..3833846(-) (exbB) [Pseudomonas lurida strain FP2043]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGCTCTATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGGCAGGTCTGGAGCTGGATCAAGAACA
AGCAACTGGACAAGGACAAACTCAAGGAACTGCGCGCCAACTCCCCGCTGGGTGAAATCCTTGCTGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAAGCCGCCGCCCGCGTCATCCATGAACTGGAGCGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCATTGCTCGGCTTGCTGGGCACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCGGCGGTGTTGGCCGGGGGGATCTCCAAGGCGCTGATCACCACGGCG
GCGGGCCTGATGGTGGGTATTCCTTCGGTGTTCTTCCACCGTTTCCTGCAGCGTCGCATTGATGAACTGGTGGTGGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAAGTGGTACAGGGCGACCGTGACGTGGACCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A855QI08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848