Detailed information NTG0785356

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSH75_RS04145
• Genome accession: NZ_CP117448
• Coordinates: 916429..917295 (-)
• Length: 288 a.a.
• NCBI ID: WP_305469863.1
• Uniprot ID: -
• Organism: Pseudomonas simiae strain FP2084
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 911429..922295

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH75_RS04105 (PSH75_04105)	-	911851..913149 (-)	1299	WP_042571057.1	NAD(P)/FAD-dependent oxidoreductase	-
PSH75_RS04110 (PSH75_04110)	-	913210..913383 (-)	174	WP_010213243.1	DUF3094 family protein	-
PSH75_RS04115 (PSH75_04115)	-	913438..914067 (-)	630	WP_010213242.1	DUF1780 domain-containing protein	-
PSH75_RS04120 (PSH75_04120)	-	914171..914638 (+)	468	WP_305469862.1	FAD/FMN-containing dehydrogenase	-
PSH75_RS04125 (PSH75_04125)	-	914635..915324 (+)	690	WP_042571059.1	energy-coupling factor ABC transporter permease	-
PSH75_RS04130 (PSH75_04130)	-	915400..915615 (+)	216	WP_003171680.1	hypothetical protein	-
PSH75_RS04135 (PSH75_04135)	yacG	915612..915812 (-)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
PSH75_RS04140 (PSH75_04140)	coaE	915809..916432 (-)	624	WP_010213235.1	dephospho-CoA kinase	-
PSH75_RS04145 (PSH75_04145)	pilD	916429..917295 (-)	867	WP_305469863.1	A24 family peptidase	Machinery gene
PSH75_RS04150 (PSH75_04150)	pilC	917292..918500 (-)	1209	WP_305469864.1	type II secretion system F family protein	Machinery gene
PSH75_RS04155 (PSH75_04155)	-	918694..919116 (+)	423	WP_021491914.1	pilin	-
PSH75_RS04160 (PSH75_04160)	-	919152..920552 (+)	1401	WP_305469866.1	O-antigen ligase	-
PSH75_RS04170 (PSH75_04170)	-	920819..921124 (+)	306	WP_010213230.1	DUF6388 family protein	-
PSH75_RS04175 (PSH75_04175)	nadC	921172..922020 (-)	849	WP_010213228.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31661.79 Da
• Isoelectric Point: 8.2632

>NTDB_id=785356 PSH75_RS04145 WP_305469863.1 916429..917295(-) (pilD) [Pseudomonas simiae strain FP2084]
MSLLLAGHPWAFVALAALLGLIVGSFLNVLVWRLPTMLEREWRAQAHEVLGLPAEPAGPTYNLMHPSSCCPHCNHPIRPW
ENIPLLSYLFLRGRCAHCQGAISARYPLTELACALISAWVAWRFSFGWQAGAVLVLSWGLLAMSLIDADHQLLPDVLVMP
LLWLGLIVNGFGLLTTLPEALWGAVIGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVV
VGLILMRLRKSHASAPMPFGPYLAIAGWIALLWGGQITNFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=785356 PSH75_RS04145 WP_305469863.1 916429..917295(-) (pilD) [Pseudomonas simiae strain FP2084]
TTGAGCCTGCTGTTGGCCGGACACCCCTGGGCTTTTGTTGCGCTGGCGGCGCTGCTGGGCCTGATCGTCGGCAGCTTTCT
CAACGTGCTGGTGTGGCGCCTTCCAACGATGCTCGAACGGGAATGGCGGGCCCAGGCGCATGAAGTACTTGGCTTGCCCG
CTGAGCCTGCCGGCCCGACCTACAACCTGATGCACCCCAGTTCCTGCTGCCCACACTGCAATCATCCGATACGTCCGTGG
GAAAATATCCCACTGCTCAGCTACCTGTTTCTGCGAGGCCGCTGCGCCCATTGCCAAGGTGCGATCAGCGCCCGTTATCC
GCTCACTGAACTGGCGTGTGCGTTGATCTCAGCCTGGGTGGCCTGGCGTTTCAGCTTTGGCTGGCAGGCGGGCGCAGTGC
TGGTGCTGAGCTGGGGATTGTTGGCGATGAGCCTGATCGATGCAGACCATCAGCTGTTGCCGGATGTGCTAGTGATGCCG
CTGCTGTGGCTGGGGCTGATCGTCAACGGGTTCGGCCTGCTGACGACACTGCCCGAGGCCTTGTGGGGTGCGGTCATCGG
GTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGACGGCATGGGCCATGGCGACTTCAAGC
TGCTGGCCTTGCTCGGCGCCTGGGGGGGCTGGCAGATCCTGCCCATGACCCTGTTGATGTCGTCGCTGGTGGGTGTGGTC
GTGGGCTTGATCCTGATGCGCCTGCGCAAGTCCCACGCGTCGGCACCGATGCCATTTGGTCCGTATCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCAACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.122	96.875	0.524
pilD	Vibrio campbellii strain DS40M4	50.357	97.222	0.49
pilD	Neisseria gonorrhoeae MS11	50.741	93.75	0.476
pilD	Acinetobacter nosocomialis M2	49.071	93.403	0.458
pilD	Acinetobacter baumannii D1279779	48.699	93.403	0.455