Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSH76_RS11195 Genome accession   NZ_CP117447
Coordinates   2426196..2428421 (+) Length   741 a.a.
NCBI ID   WP_305494084.1    Uniprot ID   A0AAJ6KV06
Organism   Pseudomonas sp. FP215     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2421196..2433421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH76_RS11180 (PSH76_11170) - 2423468..2424196 (+) 729 WP_305494082.1 response regulator transcription factor -
  PSH76_RS11185 (PSH76_11175) - 2424183..2425541 (+) 1359 WP_305494083.1 sensor histidine kinase -
  PSH76_RS11190 (PSH76_11180) - 2425545..2426060 (-) 516 WP_003192045.1 DUF2062 domain-containing protein -
  PSH76_RS11195 (PSH76_11185) comA 2426196..2428421 (+) 2226 WP_305494084.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH76_RS11200 (PSH76_11190) exbB 2428530..2429165 (+) 636 WP_003192043.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH76_RS11205 (PSH76_11195) - 2429162..2429590 (+) 429 WP_014718877.1 biopolymer transporter ExbD -
  PSH76_RS11210 (PSH76_11200) lpxK 2429590..2430600 (+) 1011 WP_138761645.1 tetraacyldisaccharide 4'-kinase -
  PSH76_RS11215 (PSH76_11205) - 2430625..2430810 (+) 186 WP_003174668.1 Trm112 family protein -
  PSH76_RS11220 (PSH76_11210) kdsB 2430807..2431571 (+) 765 WP_056783729.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH76_RS11225 (PSH76_11215) - 2431571..2432035 (+) 465 WP_044273962.1 low molecular weight protein-tyrosine-phosphatase -
  PSH76_RS11230 (PSH76_11220) murB 2432032..2433051 (+) 1020 WP_305494085.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80347.47 Da        Isoelectric Point: 10.5453

>NTDB_id=785336 PSH76_RS11195 WP_305494084.1 2426196..2428421(+) (comA) [Pseudomonas sp. FP215]
MKTGMLALALGLLTLRWLPALPPGAVLLAMLVLALMLLPFRSYPLAFFLVGLSWACFSAQRALDDRLQPALDGQTRWVEG
RVVGLPQQTGTGVRFELADGRLRKGRLPKRIRVSWHGGPVVNSGERWRLALSLKRPAGLLNFHGVDHEAWLLAQRIGATA
TVKDGERLAPARNAWRDAVRQRLMAVDAQGREAGLAALVLGDGSGLAPEDWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
VAVLARYGCWPRTWPWLPWACGLAFGAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGLWWPLLLALNGVLVLEPL
ASLQVGFWLSFAAVAVLLLAFGGRLGPWSVWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPVANLFAVPWISLVVLPLAL
LGTALLWVPLAGEAVLWLAGGALDGLFKGLALLAGQLPAWVPPEVPLGYWLVSLMGAVVLLLPKGVPFRVLGWPMLLMAV
FPPREWVPHGQVEVLQLDVGQGQALILRTRHHTLLYDAGPRSGPVDLGARVVLPSLKKLGVGQLDMMLLSHADADHAGGA
AAVARGLPVKRVVGGETEGLPAFLATQPCSSGERWEWDGVWFELWQWAGGLEGNPRSCVLQVEANGERLLLTGDIDRAAE
QAFLASPLAVPTDWLQAPHHGSRSSSSWPFVQRLAPTSVLISRGRSNTFGHPHPQVLERYQALGSRVYDSAEQGAVRLRL
GAFVPATVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=785336 PSH76_RS11195 WP_305494084.1 2426196..2428421(+) (comA) [Pseudomonas sp. FP215]
ATGAAGACAGGGATGTTGGCGTTGGCGCTGGGGTTGCTGACGTTGCGTTGGTTGCCGGCCCTGCCGCCCGGCGCCGTGCT
ATTGGCCATGCTGGTGCTGGCCTTGATGCTGTTGCCTTTTCGGTCCTATCCCTTGGCCTTCTTCCTGGTGGGGTTGAGCT
GGGCTTGCTTCAGCGCGCAGCGGGCGTTGGATGATCGACTGCAGCCGGCCCTGGACGGGCAGACTCGCTGGGTGGAGGGG
CGTGTGGTCGGCTTGCCCCAGCAGACGGGTACGGGCGTGCGCTTTGAACTGGCCGACGGCCGGTTGCGCAAGGGGCGGCT
GCCCAAACGTATTCGCGTGTCCTGGCACGGCGGGCCAGTGGTCAACAGTGGCGAACGCTGGCGCCTGGCGTTGTCGCTCA
AGCGGCCTGCGGGCCTGCTCAATTTCCATGGGGTTGACCATGAAGCCTGGCTGCTGGCCCAGCGTATCGGTGCCACTGCA
ACGGTAAAAGACGGTGAACGCCTCGCACCGGCCCGCAATGCCTGGCGCGATGCTGTTCGCCAGCGCCTGATGGCGGTGGA
TGCCCAAGGCCGCGAGGCAGGCTTGGCGGCGCTGGTATTGGGCGACGGTTCCGGCCTGGCGCCTGAGGATTGGCAGGTGT
TGCAGGACACGGGCACGGTGCATCTGCTGGTGATTTCCGGGCAGCATATCGGCTTGTTGGCGGGCTTGATCTACGGCTTG
GTCGCGGTTTTGGCGCGCTATGGTTGCTGGCCCCGAACCTGGCCGTGGCTGCCGTGGGCGTGCGGCCTGGCATTTGGCGC
AGCGTTGGGTTATGGCCTGCTGGCAGGGTTTGGTGTGCCGGTGCAGCGGGCCTGTGTGATGGTCGGCCTGGTGCTGCTGT
GGCGTTTGCGTTTTCGCCATTTGGGGCTGTGGTGGCCGTTGTTGCTGGCGCTGAACGGCGTGCTGGTGCTGGAGCCCCTG
GCCAGCCTGCAGGTGGGGTTCTGGCTGTCGTTTGCAGCGGTCGCGGTGTTGCTGCTGGCGTTCGGCGGGCGCTTGGGGCC
GTGGAGCGTCTGGCAGGCGTGGACCCGGCCCCAGTGGTTGATTGCCATTGGCTTGTTTCCGGTGTTGCTGGTGCTGGGTC
TGCCCATCAGCCTCAGCGCACCGGTGGCCAATCTGTTTGCCGTGCCGTGGATCAGCCTGGTGGTGCTGCCCCTGGCGCTG
CTGGGCACGGCGTTGTTGTGGGTGCCGCTGGCGGGGGAAGCTGTGCTGTGGCTGGCCGGCGGCGCGCTGGACGGATTGTT
CAAGGGCCTGGCGTTGCTGGCCGGGCAATTGCCGGCCTGGGTGCCGCCCGAGGTGCCGCTGGGGTATTGGCTGGTCAGCC
TGATGGGCGCGGTGGTGTTACTGCTGCCCAAAGGGGTGCCGTTCCGGGTGTTGGGCTGGCCCATGCTGTTGATGGCCGTT
TTTCCGCCCCGGGAGTGGGTGCCCCACGGACAGGTCGAGGTGCTGCAACTGGATGTCGGCCAGGGGCAAGCACTGATCCT
GCGTACCCGCCACCACACCTTGCTCTACGATGCCGGGCCGCGCTCGGGGCCTGTCGACCTCGGCGCGCGCGTCGTGTTGC
CGTCGTTGAAAAAACTCGGGGTAGGGCAGTTGGACATGATGCTGCTCAGCCATGCCGACGCCGATCACGCCGGTGGTGCG
GCAGCAGTGGCTCGGGGGCTGCCCGTCAAACGCGTGGTGGGCGGCGAAACCGAGGGTTTGCCAGCCTTTCTCGCCACCCA
GCCCTGTAGCAGCGGCGAGCGATGGGAATGGGACGGGGTGTGGTTTGAACTGTGGCAGTGGGCGGGTGGGCTTGAGGGCA
ATCCGAGGTCGTGCGTGCTGCAAGTCGAGGCCAATGGCGAGCGCCTGCTGCTCACCGGCGACATTGATCGCGCCGCTGAG
CAGGCATTTCTGGCTTCCCCGCTGGCCGTTCCGACCGACTGGCTACAAGCCCCGCACCATGGCAGCCGCAGTTCTTCGTC
CTGGCCTTTCGTGCAGCGGTTGGCGCCCACCTCGGTGTTGATTTCCCGCGGGCGCAGCAATACGTTCGGCCATCCTCATC
CGCAGGTCCTGGAACGCTACCAAGCGCTGGGCAGCCGGGTGTATGACAGTGCAGAACAGGGGGCCGTGCGCCTGCGCCTG
GGGGCGTTTGTGCCGGCGACGGTTGCGCGCAGCCAACGTCGTTTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-664)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.944

96.356

0.578
  comA Ralstonia pseudosolanacearum GMI1000

34.673

100

0.372