Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH76_RS11200 Genome accession   NZ_CP117447
Coordinates   2428530..2429165 (+) Length   211 a.a.
NCBI ID   WP_003192043.1    Uniprot ID   A0A0W0N0T4
Organism   Pseudomonas sp. FP215     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2423530..2434165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH76_RS11185 (PSH76_11175) - 2424183..2425541 (+) 1359 WP_305494083.1 sensor histidine kinase -
  PSH76_RS11190 (PSH76_11180) - 2425545..2426060 (-) 516 WP_003192045.1 DUF2062 domain-containing protein -
  PSH76_RS11195 (PSH76_11185) comA 2426196..2428421 (+) 2226 WP_305494084.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH76_RS11200 (PSH76_11190) exbB 2428530..2429165 (+) 636 WP_003192043.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH76_RS11205 (PSH76_11195) - 2429162..2429590 (+) 429 WP_014718877.1 biopolymer transporter ExbD -
  PSH76_RS11210 (PSH76_11200) lpxK 2429590..2430600 (+) 1011 WP_138761645.1 tetraacyldisaccharide 4'-kinase -
  PSH76_RS11215 (PSH76_11205) - 2430625..2430810 (+) 186 WP_003174668.1 Trm112 family protein -
  PSH76_RS11220 (PSH76_11210) kdsB 2430807..2431571 (+) 765 WP_056783729.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH76_RS11225 (PSH76_11215) - 2431571..2432035 (+) 465 WP_044273962.1 low molecular weight protein-tyrosine-phosphatase -
  PSH76_RS11230 (PSH76_11220) murB 2432032..2433051 (+) 1020 WP_305494085.1 UDP-N-acetylmuramate dehydrogenase -
  PSH76_RS11235 (PSH76_11225) - 2433123..2433794 (-) 672 WP_003192030.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22910.04 Da        Isoelectric Point: 7.3615

>NTDB_id=785337 PSH76_RS11200 WP_003192043.1 2428530..2429165(+) (exbB) [Pseudomonas sp. FP215]
MWELVKSGGWMMLPIILSSIVALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=785337 PSH76_RS11200 WP_003192043.1 2428530..2429165(+) (exbB) [Pseudomonas sp. FP215]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGTCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCACTTGCTGGGGCAAGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAAAAACTCAAGGAGCTGCGTGCCAATTCGCCACTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAAGCGGCCGCCCGGGTTATCCATGAACTGGAGCGCTACAT
CAACGCCCTTGGCACTATCGCTGCCATGGCGCCGTTGCTGGGTTTGCTCGGCACGGTACTGGGCATGATCGATATCTTCA
GTGCGTTCACGGGCTCGGGTATGACCACCAACGCGTCGGTGCTGGCCGGGGGCATTTCCAAGGCTTTGATCACCACCGCA
GCGGGCTTGATGGTGGGGATCCCTTCGGTGTTCTTCCACCGTTTCCTGCAGCGGCGCATTGATGAGCTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAGCTGGTAGAGGTGGTGCAGGGCGACCGTGATGTAGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N0T4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858