Detailed information NTG0785290

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PSH79_RS19915
• Genome accession: NZ_CP117445
• Coordinates: 4456701..4458935 (-)
• Length: 744 a.a.
• NCBI ID: WP_305439157.1
• Uniprot ID: -
• Organism: Pseudomonas sp. FP2196
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4451701..4463935

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH79_RS19880 (PSH79_19875)	murB	4452080..4453099 (-)	1020	WP_305439151.1	UDP-N-acetylmuramate dehydrogenase	-
PSH79_RS19885 (PSH79_19880)	-	4453096..4453560 (-)	465	WP_305439152.1	low molecular weight protein-tyrosine-phosphatase	-
PSH79_RS19890 (PSH79_19885)	kdsB	4453560..4454324 (-)	765	WP_305439153.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PSH79_RS19895 (PSH79_19890)	-	4454321..4454506 (-)	186	WP_187677807.1	Trm112 family protein	-
PSH79_RS19900 (PSH79_19895)	lpxK	4454529..4455539 (-)	1011	WP_305439155.1	tetraacyldisaccharide 4'-kinase	-
PSH79_RS19905 (PSH79_19900)	-	4455539..4455967 (-)	429	WP_093435463.1	biopolymer transporter ExbD	-
PSH79_RS19910 (PSH79_19905)	exbB	4455964..4456599 (-)	636	WP_305439156.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PSH79_RS19915 (PSH79_19910)	comA	4456701..4458935 (-)	2235	WP_305439157.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PSH79_RS19920 (PSH79_19915)	-	4459072..4459590 (+)	519	WP_103307266.1	DUF2062 domain-containing protein	-
PSH79_RS19925 (PSH79_19920)	-	4459746..4460525 (-)	780	WP_187677812.1	ABC transporter permease	-
PSH79_RS19930 (PSH79_19925)	-	4460522..4461454 (-)	933	WP_305439159.1	ABC transporter ATP-binding protein	-
PSH79_RS19935 (PSH79_19930)	-	4461591..4462214 (-)	624	WP_305439160.1	glutathione S-transferase family protein	-
PSH79_RS19940 (PSH79_19935)	-	4462258..4462917 (-)	660	WP_305439161.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81644.93 Da
• Isoelectric Point: 9.6673

>NTDB_id=785290 PSH79_RS19915 WP_305439157.1 4456701..4458935(-) (comA) [Pseudomonas sp. FP2196]
MRTGMMALAVGLLASVFMPALPPVWLMLLLPIAGLMLLPFRSYPLAFVLFGFTWACVGAQWALNDRLPVELDGETRWLEG
RVVGLPQISDGVVRFELADARSRHGKLPPLMRLAWYAGPPVSSGERWRLAVKLKRPGGLLNADAFDYEAWLLAQRIGATG
TIKDGQRLSEARWAWRDSIRQRLLEVDAQGRAGALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGMLAAVMYLL
VAGLARYGLWPLRWPWLPWACALAFAAALGYGLLAGFDVPVRRACVMVGLVLLWRLRFLHLGAWWPLLLAFNCVLLLDPL
ASLRPGFWLSFAAVAVLVFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLMALNLPISLSGPLANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLSGGLIDWLFRGLAMIAGQWPAWIAPSIPAWALAIGSIGAVLLLLPSGVPLRPLGWPLLLVLV
VPPRERLDAGLADIWQLDVGQGLAILIRTRHHALLYDAGPRFGDFDLGERVVLPALRKLSVEKLDLMLLSHADADHAGGA
LAVARSLKVDRVISGDPPGLPAELNAEACESGRQWHWDGVSFQLWQWSDAHDSNQRSCVLQIEANGERLLLTGDIDTHAE
RVLLESPLAVPTQWLQAPHHGSRSSSSMALLKALSPDAVLISRGQGNSFGHPHPTVLARYRKQGLRIYDSAVHGAIHLQL
GTFKPPGTMRQQRRFWRDPPAFAR

Nucleotide

• Length: 2235 bp

>NTDB_id=785290 PSH79_RS19915 WP_305439157.1 4456701..4458935(-) (comA) [Pseudomonas sp. FP2196]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTTGCCTCTGTTTTTATGCCGGCGCTACCGCCGGTCTGGTTGAT
GCTGTTGTTGCCGATCGCTGGTTTGATGCTGCTGCCGTTTCGCAGCTATCCATTGGCTTTTGTGCTGTTTGGTTTCACTT
GGGCCTGTGTCGGTGCGCAATGGGCATTGAATGATCGATTGCCAGTTGAGCTGGATGGTGAAACCCGCTGGCTCGAGGGG
CGAGTGGTCGGCCTGCCGCAAATCAGCGACGGTGTGGTGCGTTTCGAATTGGCTGATGCGCGCTCGCGTCACGGCAAACT
GCCGCCGCTGATGCGTCTGGCCTGGTACGCCGGGCCGCCGGTCAGCAGTGGCGAGCGCTGGCGCCTGGCGGTCAAGCTGA
AGCGTCCTGGCGGTTTACTCAATGCTGATGCCTTCGATTATGAAGCCTGGTTGCTGGCGCAACGCATCGGCGCGACCGGT
ACGATCAAGGATGGCCAGCGCCTGAGCGAAGCGCGATGGGCGTGGCGGGACAGCATTCGTCAGCGTTTGCTTGAGGTGGA
CGCCCAGGGGCGGGCAGGCGCGTTGGCGGCCTTGGTACTGGGCGATGGCTCAGGGCTCAGTCGCGAGGATTGGCAGATCC
TGCAGGACACCGGCACCGTGCATTTGCTGGTTATCTCCGGCCAGCACATCGGCATGTTGGCGGCGGTGATGTACTTGCTG
GTCGCCGGGTTGGCCCGATATGGGCTGTGGCCCTTGCGTTGGCCGTGGCTGCCGTGGGCCTGTGCTCTGGCATTCGCTGC
CGCGCTCGGTTACGGGCTGCTCGCCGGATTTGATGTGCCGGTGCGCCGGGCCTGCGTAATGGTCGGGCTGGTCTTGTTGT
GGCGTCTGCGCTTTCTCCATCTCGGCGCGTGGTGGCCGCTGTTGTTGGCGTTCAACTGCGTGCTGTTGCTCGATCCGCTG
GCCAGTTTGCGGCCCGGTTTTTGGCTGTCCTTCGCGGCGGTGGCGGTGCTTGTCTTCACTTTTGGCGGTCGCCTCGGGGC
GTGGCGCTGGTGGCAGACGTGGACGCGGGCGCAATGGCTGATTGCGATCGGTTTGTGTCCGGTGCTGATGGCGCTGAACC
TGCCGATCAGTCTCAGTGGGCCGTTGGCGAATTTGCTCGCGGTCCCCTGGGTCAGCCTGGTGGTATTGCCACCGGCATTG
CTCGGAACGCTATTGCTGCCGGTGCCGTATGTCGGTGAGGGGCTGTTGTGGTTGTCCGGCGGTTTGATCGACTGGCTGTT
TCGAGGCCTGGCCATGATCGCCGGGCAATGGCCGGCATGGATTGCACCGTCGATTCCCGCGTGGGCGTTGGCCATCGGCA
GTATCGGTGCCGTGCTGCTGCTGTTGCCGAGCGGGGTACCGCTGCGTCCTCTGGGTTGGCCCTTGCTGCTGGTTCTGGTC
GTGCCACCACGGGAGCGACTGGACGCAGGATTGGCCGACATCTGGCAACTCGATGTCGGCCAAGGGCTGGCGATTCTGAT
CCGCACTCGGCATCACGCATTGCTTTATGACGCCGGCCCGCGTTTCGGTGATTTCGATCTCGGTGAGCGTGTTGTGCTGC
CGGCCTTGCGCAAATTGAGCGTCGAGAAACTTGATTTGATGTTGCTCAGCCACGCGGACGCCGATCATGCCGGTGGGGCC
CTGGCAGTGGCGCGCAGCTTGAAGGTGGATCGAGTCATCAGTGGTGACCCACCGGGATTGCCCGCCGAACTGAATGCCGA
AGCATGCGAAAGCGGACGCCAGTGGCACTGGGATGGCGTCAGTTTTCAGCTCTGGCAATGGTCGGATGCCCATGACAGTA
ATCAGCGCTCCTGCGTATTGCAGATCGAGGCAAATGGTGAGCGCCTGCTGTTGACCGGTGATATCGACACCCATGCCGAG
CGCGTGTTGCTGGAAAGTCCATTGGCGGTGCCTACGCAATGGCTGCAAGCGCCGCACCACGGCAGTCGCAGTTCCTCTTC
AATGGCCTTGCTCAAAGCCTTGAGCCCCGACGCTGTGCTGATTTCTCGGGGCCAGGGCAATTCCTTCGGGCATCCGCACC
CCACCGTGCTCGCCCGCTATCGCAAACAGGGTCTGCGCATCTACGACAGTGCGGTGCATGGCGCCATTCATCTGCAACTC
GGTACCTTCAAACCGCCCGGAACAATGCGCCAACAGCGACGCTTCTGGCGTGATCCGCCTGCTTTTGCCCGTTGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

• Competence protein (Competence) (198-463)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.291	96.237	0.599
comA	Ralstonia pseudosolanacearum GMI1000	33.214	100	0.375