Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH79_RS19910 Genome accession   NZ_CP117445
Coordinates   4455964..4456599 (-) Length   211 a.a.
NCBI ID   WP_305439156.1    Uniprot ID   -
Organism   Pseudomonas sp. FP2196     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4450964..4461599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH79_RS19875 (PSH79_19870) - 4451364..4451834 (-) 471 WP_221733707.1 (2Fe-2S)-binding protein -
  PSH79_RS19880 (PSH79_19875) murB 4452080..4453099 (-) 1020 WP_305439151.1 UDP-N-acetylmuramate dehydrogenase -
  PSH79_RS19885 (PSH79_19880) - 4453096..4453560 (-) 465 WP_305439152.1 low molecular weight protein-tyrosine-phosphatase -
  PSH79_RS19890 (PSH79_19885) kdsB 4453560..4454324 (-) 765 WP_305439153.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH79_RS19895 (PSH79_19890) - 4454321..4454506 (-) 186 WP_187677807.1 Trm112 family protein -
  PSH79_RS19900 (PSH79_19895) lpxK 4454529..4455539 (-) 1011 WP_305439155.1 tetraacyldisaccharide 4'-kinase -
  PSH79_RS19905 (PSH79_19900) - 4455539..4455967 (-) 429 WP_093435463.1 biopolymer transporter ExbD -
  PSH79_RS19910 (PSH79_19905) exbB 4455964..4456599 (-) 636 WP_305439156.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH79_RS19915 (PSH79_19910) comA 4456701..4458935 (-) 2235 WP_305439157.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH79_RS19920 (PSH79_19915) - 4459072..4459590 (+) 519 WP_103307266.1 DUF2062 domain-containing protein -
  PSH79_RS19925 (PSH79_19920) - 4459746..4460525 (-) 780 WP_187677812.1 ABC transporter permease -
  PSH79_RS19930 (PSH79_19925) - 4460522..4461454 (-) 933 WP_305439159.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22941.07 Da        Isoelectric Point: 6.8771

>NTDB_id=785289 PSH79_RS19910 WP_305439156.1 4455964..4456599(-) (exbB) [Pseudomonas sp. FP2196]
MWELVKSGGWMMLPIILSSIVAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAGRVIHELERYVNALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=785289 PSH79_RS19910 WP_305439156.1 4455964..4456599(-) (exbB) [Pseudomonas sp. FP2196]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGTGGCCATGGCGATTGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTTACCCCCGAGCATCTGCTGGGCCAGGTCTGGGTCTGGATCAAGGACA
AACAGCTCAATAAAGAAAAACTCAAGGAATTACGCGCCAATTCGCCGCTGGGTGAAATCCTCGCGGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAAGCCGCAGGCCGGGTGATCCATGAGCTCGAGCGCTACGT
CAATGCACTCGGCACCATCGCTGCCATGGCGCCGTTGCTGGGTCTGTTGGGAACAGTGTTGGGCATGATCGATATTTTCA
GTGCTTTTACCGGTTCAGGCATGACCACTAATGCGTCGGTGCTGGCCGGCGGTATTTCCAAAGCGCTGATCACCACTGCG
GCAGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGGTTCCTGCAGCGCCGCATCGATGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCAATCAAACTGGTTGAAGTGGTGCAGGGCGACCGTGACGTCGACCTGGCCGAGGGCCGCGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844