Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSH94_RS14975 Genome accession   NZ_CP117444
Coordinates   3277083..3279308 (-) Length   741 a.a.
NCBI ID   WP_305435052.1    Uniprot ID   -
Organism   Pseudomonas sp. FP2254     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3272083..3284308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH94_RS14940 (PSH94_14935) murB 3272462..3273481 (-) 1020 WP_181076691.1 UDP-N-acetylmuramate dehydrogenase -
  PSH94_RS14945 (PSH94_14940) - 3273478..3273942 (-) 465 WP_305435046.1 low molecular weight protein-tyrosine-phosphatase -
  PSH94_RS14950 (PSH94_14945) kdsB 3273942..3274706 (-) 765 WP_181076688.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH94_RS14955 (PSH94_14950) - 3274703..3274888 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH94_RS14960 (PSH94_14955) lpxK 3274913..3275923 (-) 1011 WP_305435048.1 tetraacyldisaccharide 4'-kinase -
  PSH94_RS14965 (PSH94_14960) - 3275923..3276351 (-) 429 WP_181076685.1 biopolymer transporter ExbD -
  PSH94_RS14970 (PSH94_14965) exbB 3276348..3276983 (-) 636 WP_159936015.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH94_RS14975 (PSH94_14970) comA 3277083..3279308 (-) 2226 WP_305435052.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH94_RS14980 (PSH94_14975) - 3279444..3279959 (+) 516 WP_181076681.1 DUF2062 domain-containing protein -
  PSH94_RS14985 (PSH94_14980) - 3279963..3281333 (-) 1371 WP_305435053.1 sensor histidine kinase -
  PSH94_RS14990 (PSH94_14985) - 3281320..3282036 (-) 717 WP_181076678.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80009.90 Da        Isoelectric Point: 11.1685

>NTDB_id=785263 PSH94_RS14975 WP_305435052.1 3277083..3279308(-) (comA) [Pseudomonas sp. FP2254]
MRTGMCALALGLLAVVFLPTLPATGWLIGMLALALMLLPFRTYPLAFFLLGLSWASIGAQWALNDRLSPALDGQTRWVEG
RVTGLPQQTEEAVRFELTDARSRAGRLPKRIRVSWRDGPPVRSGERWRLAITLKRPAGLLNFHGFDREAWLLAQRVGATG
SVKDGQRLAPAHNAWRDGVRQRLLAVDAHGREAGLAALVLGDGSGLTIEDWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IAGLARRGAWPRGWPWLPWACGLAFAAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLAFNGVLILEPL
ASLQAGFWLSFAAVAVLILAFSGRLGPWSLWQVWTRPQCAIAVGLFPVLLVLGLPISLSAPLANLVAVPWISLVVLPLAL
LGTALLSVPVVGEGLLWLAGGALDGLFVGLAWLAGHMPAWLPAQVPWAAWLVSLLGAVVLLLPRGVPLRGLGWPMLLLAV
FPPRAPVPHGQVDVLQLDVGQGQALILRTRNHTLLYDAGPRSGAFDLGARVVLPSLKKLGVAKLDLLLLSHADADHAGGA
VAIARGMPVDRVISGETQRLPALLGAQACVSGRQWVWDGVAFELWQWPEAISGNAKSCVLQVQANGERLLLTGDIDHAAE
RALLDSPLAVPTDWLQAPHHGSHSSSSWAFLERLAPRSVLISRGRGNAFGHPHPQVMERYRALGSRVYDSAQQGAVRLQL
GAFATPEVARGQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=785263 PSH94_RS14975 WP_305435052.1 3277083..3279308(-) (comA) [Pseudomonas sp. FP2254]
ATGAGGACAGGGATGTGTGCGCTTGCGTTGGGGCTGCTGGCGGTGGTGTTCCTACCCACGCTGCCTGCCACGGGATGGCT
GATAGGCATGCTGGCGCTGGCGTTGATGCTGTTGCCATTTCGAACCTACCCACTGGCGTTTTTCCTCCTGGGACTGAGTT
GGGCATCTATCGGCGCGCAGTGGGCCCTTAATGACCGGCTGTCGCCGGCGCTGGATGGGCAGACCCGTTGGGTAGAAGGC
CGGGTGACGGGGTTGCCGCAACAAACCGAAGAGGCGGTGCGTTTCGAACTGACCGACGCACGGTCGCGGGCGGGTCGATT
ACCCAAGCGTATTCGCGTGTCCTGGCGTGACGGCCCGCCGGTACGCAGCGGCGAACGATGGCGTTTGGCAATTACCTTGA
AACGGCCTGCCGGTCTGCTGAATTTCCATGGCTTTGACCGCGAAGCCTGGCTGCTGGCCCAGCGTGTCGGTGCGACCGGT
TCGGTGAAAGACGGCCAACGCCTGGCGCCAGCGCACAATGCCTGGCGCGACGGCGTGCGCCAGCGGCTGCTGGCGGTGGA
TGCCCATGGTCGCGAGGCGGGCCTGGCCGCTCTGGTGCTGGGCGATGGCTCCGGCCTCACCATTGAGGACTGGCAGGTCT
TGCAGGACACCGGCACGGTGCATCTGTTGGTGATTTCCGGGCAACACATCGGCCTCCTGGCAGGCCTGATCTACGGGCTG
ATCGCCGGGCTGGCGCGTCGGGGCGCCTGGCCGCGAGGCTGGCCGTGGCTGCCGTGGGCCTGTGGCCTGGCGTTTGCCGC
CGCCCTGGGTTACGGATTGCTGGCCGGCTTCGGCGTGCCGGTGCAGCGTGCGTGTGTGATGGTAGGGCTGGTGCTGTTGT
GGCGTTTGCGTTTTCGTCATCTGGGCGTGTGGTGGCCATTGTTGCTGGCATTCAATGGGGTGTTGATCCTGGAGCCGTTG
GCCAGCCTGCAGGCAGGTTTCTGGCTGTCGTTTGCGGCGGTGGCGGTGCTGATCCTGGCGTTCAGCGGGCGTCTGGGGCC
GTGGAGCCTCTGGCAGGTATGGACGCGGCCGCAATGCGCGATCGCCGTTGGGCTGTTTCCGGTACTGCTGGTGCTGGGGT
TGCCCATCAGCCTGAGTGCGCCGCTCGCCAATCTGGTGGCCGTGCCGTGGATCAGCCTGGTCGTACTGCCATTGGCGCTG
TTGGGCACCGCCCTGTTGAGCGTGCCAGTTGTAGGGGAAGGGCTGTTGTGGCTCGCGGGCGGCGCATTGGATGGGTTGTT
CGTCGGCCTGGCCTGGCTCGCAGGGCACATGCCCGCCTGGCTGCCGGCCCAAGTGCCGTGGGCTGCCTGGCTGGTCAGCC
TGCTCGGCGCGGTGGTGCTGTTATTGCCCCGCGGCGTGCCGCTGCGGGGGCTGGGTTGGCCGATGCTGCTGCTGGCGGTA
TTCCCTCCGCGCGCGCCGGTGCCCCACGGCCAGGTCGATGTGTTGCAACTGGATGTAGGGCAAGGGCAAGCGCTGATTCT
GCGTACTCGCAATCACACGTTGCTCTACGACGCCGGGCCGCGCTCGGGAGCGTTCGACCTGGGCGCGCGCGTGGTGCTGC
CGTCCTTGAAGAAACTTGGCGTCGCCAAATTGGACCTGCTGCTGCTCAGCCATGCCGATGCCGACCATGCGGGCGGCGCG
GTGGCGATCGCGCGAGGCATGCCGGTTGACCGCGTGATCAGCGGAGAAACGCAAAGGCTGCCGGCCCTGCTCGGCGCGCA
GGCGTGTGTCAGTGGCCGGCAGTGGGTATGGGACGGGGTGGCTTTTGAATTATGGCAATGGCCTGAGGCTATCAGCGGCA
ACGCGAAATCCTGTGTCCTGCAAGTGCAGGCCAACGGGGAGCGCCTATTGCTGACCGGCGATATCGATCACGCCGCCGAG
CGGGCGCTGCTCGACTCGCCGCTGGCGGTGCCGACCGACTGGCTGCAAGCGCCGCATCATGGCAGCCACAGCTCGTCCTC
CTGGGCCTTTCTGGAGCGCCTTGCGCCCCGTTCGGTGCTGATCTCGCGCGGGCGCGGCAACGCGTTCGGACATCCCCATC
CGCAGGTCATGGAGCGCTATCGGGCGCTGGGCAGCCGGGTCTACGACAGCGCCCAGCAAGGCGCCGTGCGTCTGCAATTG
GGCGCTTTTGCGACCCCGGAGGTTGCGCGCGGTCAACGGCGTTTCTGGCGCGAACGGTTACCCTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.694

97.166

0.59
  comA Ralstonia pseudosolanacearum GMI1000

36.136

100

0.389