Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH94_RS14970 Genome accession   NZ_CP117444
Coordinates   3276348..3276983 (-) Length   211 a.a.
NCBI ID   WP_159936015.1    Uniprot ID   -
Organism   Pseudomonas sp. FP2254     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3271348..3281983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH94_RS14935 (PSH94_14930) - 3271729..3272400 (+) 672 WP_003174664.1 Bax inhibitor-1/YccA family protein -
  PSH94_RS14940 (PSH94_14935) murB 3272462..3273481 (-) 1020 WP_181076691.1 UDP-N-acetylmuramate dehydrogenase -
  PSH94_RS14945 (PSH94_14940) - 3273478..3273942 (-) 465 WP_305435046.1 low molecular weight protein-tyrosine-phosphatase -
  PSH94_RS14950 (PSH94_14945) kdsB 3273942..3274706 (-) 765 WP_181076688.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH94_RS14955 (PSH94_14950) - 3274703..3274888 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH94_RS14960 (PSH94_14955) lpxK 3274913..3275923 (-) 1011 WP_305435048.1 tetraacyldisaccharide 4'-kinase -
  PSH94_RS14965 (PSH94_14960) - 3275923..3276351 (-) 429 WP_181076685.1 biopolymer transporter ExbD -
  PSH94_RS14970 (PSH94_14965) exbB 3276348..3276983 (-) 636 WP_159936015.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH94_RS14975 (PSH94_14970) comA 3277083..3279308 (-) 2226 WP_305435052.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH94_RS14980 (PSH94_14975) - 3279444..3279959 (+) 516 WP_181076681.1 DUF2062 domain-containing protein -
  PSH94_RS14985 (PSH94_14980) - 3279963..3281333 (-) 1371 WP_305435053.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22767.94 Da        Isoelectric Point: 7.3613

>NTDB_id=785262 PSH94_RS14970 WP_159936015.1 3276348..3276983(-) (exbB) [Pseudomonas sp. FP2254]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKEKLKALRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGAGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=785262 PSH94_RS14970 WP_159936015.1 3276348..3276983(-) (exbB) [Pseudomonas sp. FP2254]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCTTGAGCTCCATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCGAGCCGTGTCACCCCCGAGCATCTGCTGGGGCAGGTGTGGGGCTGGATCAAGAACA
AACAGCTGGACAAGGAAAAGCTCAAGGCACTGCGCGCCGATTCACCGCTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGCCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTGATCCACGAACTGGAGCGTTATAT
CAACGCTCTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGTTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCGCGGGTATGACCACCAACGCGGCGGTGCTGGCCGGCGGCATTTCCAAGGCACTGATTACCACCGCG
GCAGGCTTGATGGTGGGGATTCCCTCGGTGTTCTTCCATCGTTTCCTGCAGCGCCGCATCGATGAACTGGTCGTGGGCAT
GGAACAGGAAGCCATCAAATTGGTGGAAGTGGTGCAGGGCGATCGCGACGTGGATCTGGTTGGAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848