Detailed information NTG0785255

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSH94_RS03810
• Genome accession: NZ_CP117444
• Coordinates: 859165..860031 (-)
• Length: 288 a.a.
• NCBI ID: WP_181079640.1
• Uniprot ID: -
• Organism: Pseudomonas sp. FP2254
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 854165..865031

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH94_RS03775 (PSH94_03775)	-	854991..856289 (-)	1299	WP_181079634.1	NAD(P)/FAD-dependent oxidoreductase	-
PSH94_RS03780 (PSH94_03780)	-	856350..856523 (-)	174	WP_181079635.1	DUF3094 family protein	-
PSH94_RS03785 (PSH94_03785)	-	856575..857204 (-)	630	WP_181079636.1	DUF1780 domain-containing protein	-
PSH94_RS03790 (PSH94_03790)	-	857378..858067 (+)	690	WP_181079637.1	energy-coupling factor ABC transporter permease	-
PSH94_RS03795 (PSH94_03795)	-	858133..858348 (+)	216	WP_003171680.1	hypothetical protein	-
PSH94_RS03800 (PSH94_03800)	yacG	858345..858545 (-)	201	WP_181079638.1	DNA gyrase inhibitor YacG	-
PSH94_RS03805 (PSH94_03805)	coaE	858542..859168 (-)	627	WP_181079639.1	dephospho-CoA kinase	-
PSH94_RS03810 (PSH94_03810)	pilD	859165..860031 (-)	867	WP_181079640.1	A24 family peptidase	Machinery gene
PSH94_RS03815 (PSH94_03815)	pilC	860028..861236 (-)	1209	WP_305436527.1	type II secretion system F family protein	Machinery gene
PSH94_RS03820 (PSH94_03820)	-	861434..861847 (+)	414	WP_181079661.1	pilin	-
PSH94_RS03825 (PSH94_03825)	-	861883..863283 (+)	1401	WP_305436529.1	O-antigen ligase	-
PSH94_RS03835 (PSH94_03835)	-	863553..863858 (+)	306	WP_305436531.1	DUF6388 family protein	-
PSH94_RS03840 (PSH94_03840)	nadC	863920..864768 (-)	849	WP_181079644.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31617.62 Da
• Isoelectric Point: 7.6858

>NTDB_id=785255 PSH94_RS03810 WP_181079640.1 859165..860031(-) (pilD) [Pseudomonas sp. FP2254]
MSQLLSESPWLFVALTALLGLIVGSFLNVLVWRLPKMLAREWRAQAHEVLGFPAEAAGPTYNLMHPNSCCPHCEQPIRPW
NNIPLLSYLLLGGRCAHCKGTISARYPFTELACGVLSALVAWHFGFGWQAAAVMLLTWGLLAMSLIDADHQLLPDVLVLP
LLWLGLIVNNFALLVPLSDAVWGAVVGYMSLWSVFWLFKLITGKDGMGHGDFKLLALLGAWGGWQIVPMTLFVASLVGVF
AGLTLMRLRKAQVSTPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFQ

Nucleotide

• Length: 867 bp

>NTDB_id=785255 PSH94_RS03810 WP_181079640.1 859165..860031(-) (pilD) [Pseudomonas sp. FP2254]
TTGAGCCAGCTGTTGAGTGAATCCCCCTGGCTGTTTGTGGCGCTGACGGCTTTGCTGGGGCTGATCGTCGGCAGCTTTCT
CAATGTGCTGGTGTGGCGCCTGCCGAAGATGCTTGCACGGGAGTGGCGTGCCCAAGCCCACGAAGTGCTGGGTTTTCCTG
CCGAAGCAGCGGGGCCGACCTATAACCTGATGCACCCCAATTCCTGCTGCCCCCATTGCGAGCAGCCGATCCGCCCCTGG
AACAATATCCCGCTGCTCAGCTACCTGCTCCTCGGGGGCCGGTGCGCCCACTGCAAGGGAACCATCAGCGCTCGTTACCC
CTTCACCGAACTCGCCTGCGGGGTGCTGTCGGCGCTGGTGGCCTGGCATTTTGGTTTTGGCTGGCAAGCCGCAGCGGTGA
TGCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGACCATCAGTTGCTGCCGGATGTGCTGGTGCTGCCG
CTTCTTTGGCTGGGTCTGATCGTCAACAATTTCGCATTGCTGGTGCCGTTGTCCGACGCGGTGTGGGGCGCGGTGGTCGG
GTACATGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATCACAGGCAAGGACGGCATGGGTCACGGCGACTTCAAGT
TACTGGCTCTGCTCGGGGCCTGGGGTGGCTGGCAAATCGTGCCGATGACGCTATTTGTGGCGTCATTGGTCGGCGTGTTT
GCCGGGCTGACCCTGATGCGCCTGCGCAAGGCCCAGGTATCCACACCCATGCCGTTTGGACCCTATTTGGCGATTGCCGG
CTGGATTGCGTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCCAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.448	99.306	0.521
pilD	Neisseria gonorrhoeae MS11	51.111	93.75	0.479
pilD	Vibrio campbellii strain DS40M4	48.07	98.958	0.476
pilD	Acinetobacter baumannii D1279779	45.985	95.139	0.437
pilD	Acinetobacter nosocomialis M2	45.985	95.139	0.437