Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PSH83_RS24570 Genome accession   NZ_CP117443
Coordinates   5592433..5593779 (+) Length   448 a.a.
NCBI ID   WP_305468544.1    Uniprot ID   -
Organism   Pseudomonas beijingensis strain FP2262     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5587433..5598779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH83_RS24545 (PSH83_24545) pgeF 5587647..5588372 (-) 726 WP_122564925.1 peptidoglycan editing factor PgeF -
  PSH83_RS24550 (PSH83_24550) rluD 5588369..5589331 (-) 963 WP_003205696.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSH83_RS24555 (PSH83_24555) - 5589482..5590498 (+) 1017 WP_305491126.1 outer membrane protein assembly factor BamD -
  PSH83_RS24560 (PSH83_24560) - 5590624..5590857 (+) 234 WP_122564926.1 PP0621 family protein -
  PSH83_RS24565 (PSH83_24565) pilS 5590847..5592436 (+) 1590 WP_305491127.1 ATP-binding protein Regulator
  PSH83_RS24570 (PSH83_24570) pilR 5592433..5593779 (+) 1347 WP_305468544.1 sigma-54 dependent transcriptional regulator Regulator
  PSH83_RS24575 (PSH83_24575) - 5593955..5594320 (-) 366 WP_305481921.1 DUF6124 family protein -
  PSH83_RS24580 (PSH83_24580) - 5594728..5595615 (-) 888 Protein_4851 IS5 family transposase -
  PSH83_RS24585 (PSH83_24585) - 5596506..5596670 (-) 165 WP_163006672.1 hypothetical protein -
  PSH83_RS24590 (PSH83_24590) thiO 5596924..5598024 (-) 1101 WP_305491128.1 glycine oxidase ThiO -
  PSH83_RS24595 (PSH83_24595) - 5598082..5598483 (-) 402 WP_305468548.1 type IV pilin protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49959.38 Da        Isoelectric Point: 5.9869

>NTDB_id=785244 PSH83_RS24570 WP_305468544.1 5592433..5593779(+) (pilR) [Pseudomonas beijingensis strain FP2262]
MNNRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQALLAGDAFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPAVATPTSTIERCLLGDSPPMRSVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRANQGFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIEPLA
NHMLQRLAANTGSPAVKLHPQALAALQNYRFPGNVRELENMLERAYTLCEQQLIEADDLRLAEGNNAGEAGKPDLMQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=785244 PSH83_RS24570 WP_305468544.1 5592433..5593779(+) (pilR) [Pseudomonas beijingensis strain FP2262]
TTGAACAATCGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTGCCGAGGCCCAAGCCCTGCTGGCGGGAGATGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGTACTGGCTTGGAACTGGTGCAGCACATCCAGCAACGTTATCCACAACTGCCC
GTGGCGATGATCACCGCCTACGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGCGCTTTCGATTTCCTGACCAA
GCCGGTCGACCTGGGGCGGCTGCGGGAACTGGTCACCAGCGCCCTGCGCCTGCCAGCCGTCGCCACACCGACCAGCACCA
TCGAGCGATGCCTTCTGGGCGACTCGCCGCCGATGCGCAGCGTGCGCAAACAGATCGAAAAACTCGCCCGCAGCCAGGCG
CCGGTGTACATCAGTGGGGAGTCGGGTTGCGGCAAGGAACTGGTCGCCCGGCTGATCCACGAACAAGGCCCCCGTGCCAA
CCAGGGCTTTGTGCCGGTCAACTGTGGGGCGATTCCCACGGAACTGATGGAAAGCGAGTTCTTTGGCCATCGCAAAGGCA
GCTTCAGCGGCGCCATCGAAGACAAGCCCGGACTGTTCCAGGCCGCCCATGGCGGGACTCTGTTCCTTGATGAAGTGGCC
GACCTGCCCCTGGCGATGCAGGTCAAGCTGTTGCGAGCCATCCAGGAAAAAGCCGTGCGCGCCGTGGGCGGCCAGCAGGA
AGAAGTGGTGGATGTACGCATCCTCTGCGCCACCCATAAGGACCTGGACGCCGAAGTCGCCGCCGGGCGCTTTCGCCAGG
ATCTGTATTACCGGCTGAACGTCATCGAACTGCGCGTGCCGCCCTTGCGCGAACGCCGCGAAGACATCGAACCGCTGGCC
AATCACATGCTCCAGCGCTTGGCGGCCAACACCGGCAGCCCCGCAGTAAAACTCCATCCCCAGGCCCTGGCCGCGCTGCA
AAACTACCGCTTCCCGGGCAATGTGCGGGAGCTGGAGAACATGCTCGAACGGGCCTACACCCTGTGCGAACAACAACTGA
TCGAAGCCGACGACCTGCGCCTGGCCGAAGGCAATAATGCCGGCGAGGCGGGCAAACCCGATTTGATGCAGGTCGACAAT
CTGGAGGACTACCTGGAAGACGTCGAGCGTAAGCTGATCCTTCAAGCACTGGAGGAAACCCGCTGGAACCGTACGGCGGC
GGCGCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAACTTGGGCTGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Response regulator receiver domain (Response_reg)

(9-118)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.604

99.107

0.779
  pilR Acinetobacter baumannii strain A118

49.237

100

0.504