Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PSH83_RS24565 Genome accession   NZ_CP117443
Coordinates   5590847..5592436 (+) Length   529 a.a.
NCBI ID   WP_305491127.1    Uniprot ID   -
Organism   Pseudomonas beijingensis strain FP2262     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5585847..5597436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH83_RS24545 (PSH83_24545) pgeF 5587647..5588372 (-) 726 WP_122564925.1 peptidoglycan editing factor PgeF -
  PSH83_RS24550 (PSH83_24550) rluD 5588369..5589331 (-) 963 WP_003205696.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSH83_RS24555 (PSH83_24555) - 5589482..5590498 (+) 1017 WP_305491126.1 outer membrane protein assembly factor BamD -
  PSH83_RS24560 (PSH83_24560) - 5590624..5590857 (+) 234 WP_122564926.1 PP0621 family protein -
  PSH83_RS24565 (PSH83_24565) pilS 5590847..5592436 (+) 1590 WP_305491127.1 ATP-binding protein Regulator
  PSH83_RS24570 (PSH83_24570) pilR 5592433..5593779 (+) 1347 WP_305468544.1 sigma-54 dependent transcriptional regulator Regulator
  PSH83_RS24575 (PSH83_24575) - 5593955..5594320 (-) 366 WP_305481921.1 DUF6124 family protein -
  PSH83_RS24580 (PSH83_24580) - 5594728..5595615 (-) 888 Protein_4851 IS5 family transposase -
  PSH83_RS24585 (PSH83_24585) - 5596506..5596670 (-) 165 WP_163006672.1 hypothetical protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58841.53 Da        Isoelectric Point: 7.4039

>NTDB_id=785243 PSH83_RS24565 WP_305491127.1 5590847..5592436(+) (pilS) [Pseudomonas beijingensis strain FP2262]
MSAEASSPRVKQTQRLLRLYHLYRLSIGITLVLLISSNMDNRLLEFANDDLLRSGSWLYLVLNILLVVFLENTRRPARLF
GLALTDVLLLSWLFFAAGGVPSAIGNLIIVSVAIGNTLLRGRIGLLIAAVATLGIVGSSFFLGLSDSNRPSSYLQAGTLG
ALCFAAALLVQGLTRRLEASETLAEQRASEVVGLEALNALILQRMRTGILVLDRERRVQLANESALNLLGMHDLVGQQLD
DYSTALVERLQLWRNNPSLRPSSLTVTGTGLALQPSFIALGHNDQHQILVFLEDLAQVAQHAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNDADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTTPQRLDLRTWLDQFVRQARESMAEH
QRLHLSIDPGDYTTLMDPDQLTQVLDNLLRNAWRHSAMAHEQAEAWLKLFIDPHSQLSTLDIIDNGPGVTPEQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=785243 PSH83_RS24565 WP_305491127.1 5590847..5592436(+) (pilS) [Pseudomonas beijingensis strain FP2262]
GTGAGCGCTGAGGCCTCAAGCCCACGCGTCAAACAGACGCAGCGCCTGCTGCGCCTCTATCACCTGTACCGCCTGAGTAT
CGGCATCACCCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGGAGTTCGCCAACGACGACCTGCTGCGCA
GCGGTAGCTGGTTGTACCTGGTGCTGAACATCCTGCTGGTGGTGTTCCTTGAGAACACCCGACGCCCTGCCCGACTGTTC
GGCCTGGCCCTCACCGACGTGCTCTTGCTTTCATGGCTGTTTTTCGCAGCCGGCGGTGTGCCCAGTGCCATCGGCAACCT
GATCATCGTCTCGGTGGCCATCGGTAACACGCTGTTGCGCGGCAGGATCGGCCTGTTGATCGCGGCCGTCGCCACCCTCG
GCATCGTCGGTTCGAGTTTTTTTCTTGGTTTGAGCGACTCGAACCGTCCCAGCAGCTATTTGCAGGCCGGTACCCTCGGG
GCGCTGTGTTTTGCCGCCGCGCTGCTGGTGCAAGGCCTGACCCGACGCTTGGAAGCCAGCGAAACCCTGGCCGAGCAACG
GGCCAGCGAAGTGGTCGGCCTGGAAGCGCTCAACGCCCTGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTCGACC
GTGAGCGTCGGGTCCAGTTGGCCAACGAAAGCGCATTGAATCTGCTGGGCATGCACGATCTGGTCGGCCAGCAGCTCGAC
GATTACTCCACTGCCCTGGTCGAACGCCTGCAATTATGGCGAAACAACCCCAGCCTGCGCCCGTCCAGCCTGACCGTTAC
CGGCACGGGCCTGGCCCTGCAACCGAGCTTCATCGCCCTGGGCCACAACGACCAGCATCAAATCCTGGTGTTCCTCGAAG
ACCTGGCTCAGGTTGCCCAGCATGCCCAGCAGCTCAAGCTCGCCTCCCTGGGGCGCCTGACCGCCGGTATCGCTCATGAA
ATCCGCAACCCCTTGGGCGCCATCAGCCACGCGGCGCAATTGCTGCGCGAATCAGAGGAACTGAACGACGCGGATCGGCG
TCTGACGCAGATTATTCAAGATCACTCCCAACGAATGAATCGCGTCATTGAAAACGTTCTGCAGCTGTCTCGTCGCCAGC
AAACCACACCCCAGCGTCTCGACCTGCGTACCTGGCTCGACCAATTCGTCCGGCAGGCCCGCGAAAGCATGGCCGAACAC
CAGCGCTTGCACCTGAGCATCGACCCGGGGGACTACACCACGCTGATGGACCCCGACCAGCTCACCCAGGTACTCGACAA
CCTGCTGCGCAACGCCTGGCGCCACAGCGCAATGGCCCATGAGCAGGCCGAGGCCTGGTTGAAACTGTTCATCGACCCCC
ACAGCCAGCTGTCGACCTTGGACATCATCGACAACGGCCCCGGTGTAACGCCCGAGCAGCAGGCGCATTTGTTCGAACCT
TTCTTCACCACCAGCAGCCAGGGCACCGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGTTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.848

99.811

0.597