Detailed information NTG0785238

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PSH83_RS20480
• Genome accession: NZ_CP117443
• Coordinates: 4711639..4713885 (-)
• Length: 748 a.a.
• NCBI ID: WP_305467887.1
• Uniprot ID: -
• Organism: Pseudomonas beijingensis strain FP2262
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4706639..4718885

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH83_RS20445 (PSH83_20445)	murB	4707023..4708042 (-)	1020	WP_305490895.1	UDP-N-acetylmuramate dehydrogenase	-
PSH83_RS20450 (PSH83_20450)	-	4708039..4708503 (-)	465	WP_122565900.1	low molecular weight protein-tyrosine-phosphatase	-
PSH83_RS20455 (PSH83_20455)	kdsB	4708503..4709267 (-)	765	WP_122565901.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PSH83_RS20460 (PSH83_20460)	-	4709264..4709449 (-)	186	WP_003179363.1	Trm112 family protein	-
PSH83_RS20465 (PSH83_20465)	lpxK	4709473..4710483 (-)	1011	WP_122565902.1	tetraacyldisaccharide 4'-kinase	-
PSH83_RS20470 (PSH83_20470)	-	4710483..4710911 (-)	429	WP_053123850.1	biopolymer transporter ExbD	-
PSH83_RS20475 (PSH83_20475)	exbB	4710908..4711543 (-)	636	WP_025214875.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PSH83_RS20480 (PSH83_20480)	comA	4711639..4713885 (-)	2247	WP_305467887.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PSH83_RS20485 (PSH83_20485)	-	4714030..4714545 (+)	516	WP_122565904.1	DUF2062 domain-containing protein	-
PSH83_RS20490 (PSH83_20490)	-	4714724..4715503 (-)	780	WP_041476072.1	ABC transporter permease	-
PSH83_RS20495 (PSH83_20495)	-	4715506..4716438 (-)	933	WP_305490896.1	ABC transporter ATP-binding protein	-
PSH83_RS20500 (PSH83_20500)	-	4716574..4717197 (-)	624	WP_122565983.1	glutathione S-transferase family protein	-
PSH83_RS20505 (PSH83_20505)	-	4717242..4717901 (-)	660	WP_122565906.1	transglutaminase family protein	-

Sequence

Protein

• Length: 748 a.a.
• Molecular weight: 81094.29 Da
• Isoelectric Point: 9.8421

>NTDB_id=785238 PSH83_RS20480 WP_305467887.1 4711639..4713885(-) (comA) [Pseudomonas beijingensis strain FP2262]
MRTGLVALALGLVAPIFLPALPPLWLIAAMPVLALMALPFRTYAAGFFLFGLAWACLSAQWALDNRLPAALDGETRWVEG
RVVGLPQQGDGVVRFELADAHSRRTRLPTTMRLAWFGGPPVNSGERWRLAVKLKRPAGLLNPHGFDYAAWLLSRGIGATG
TVKEGRLLQAARGAWRDEVRQALAQVDTHGRSGALAALVLGDGGGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
VAGAARYGLWPTGLAWLPWACALAFCAALGYGLLAGFEVPVRRACAMIGLVLLWRLRFKQPDPWWAWLLAFVGVLVFDPL
ASLRPGFWLSFAAVAILMFTFGARLGPWRWWQTWTRAQWLVAVGLCPLLLIVGLPVSLSGPLVNLLAVPWISLLVLPPAL
LGTALLPVPLIGEGLLWIAGGLLDLLFKGLGLMAGRMPAWVPVAVPPWALGIAALGAFLLLLPKGVPLRVLGWPMMLLMV
FPPREHLPQGHAEVWQLDVGQGLAVLVRTRHHSLLYDAGPRFGEADVGERVVLPTLRKLGVRGLDLMLLSHADADHAGGA
LAVRKGLPTMEVISGDPDALPDELQAGPCDSGRRWEWDGVGFELWRWASAVESNQKSCVLLVEAGGERLLLTGDIDTPAE
RALLDEALALPIQWLAAPHHGSRSSSSMALLSRLKPHSVLISRGQGNAFGHPHPQVMARYRRLGLATYDSAEQGAIRLQL
GAFELPRTEAGHRRYWRDPPAVGTPRQH

Nucleotide

• Length: 2247 bp

>NTDB_id=785238 PSH83_RS20480 WP_305467887.1 4711639..4713885(-) (comA) [Pseudomonas beijingensis strain FP2262]
ATGCGCACAGGGTTAGTCGCGCTTGCACTGGGGCTGGTGGCCCCGATTTTTTTACCGGCACTGCCGCCGTTGTGGCTGAT
TGCAGCCATGCCGGTGCTGGCATTGATGGCGTTGCCATTTCGAACCTACGCGGCGGGTTTTTTCCTGTTCGGGCTGGCCT
GGGCCTGCCTGTCGGCGCAGTGGGCGCTGGACAATCGATTACCCGCCGCCCTGGACGGAGAAACCCGTTGGGTTGAAGGG
CGCGTCGTCGGTTTGCCGCAACAGGGCGACGGCGTGGTGCGCTTCGAACTGGCCGATGCCCATTCACGTCGTACCCGATT
ACCGACAACGATGCGCCTCGCCTGGTTCGGTGGCCCGCCCGTCAACAGCGGCGAACGCTGGCGATTGGCAGTGAAGCTCA
AGCGGCCTGCCGGGCTGCTGAACCCGCACGGCTTCGACTATGCCGCCTGGTTGTTGAGCCGTGGCATTGGCGCGACCGGT
ACCGTCAAGGAGGGGCGTCTGCTGCAAGCAGCCCGGGGCGCCTGGCGTGACGAGGTGCGCCAGGCGCTGGCACAGGTCGA
CACCCACGGCCGCTCCGGTGCGCTGGCGGCATTGGTCCTGGGCGACGGGGGTGGGCTGAGCCGCGAGGACTGGCAGGTTT
TGCAAGACACCGGCACGGTCCATTTGCTGGTGATCTCCGGGCAACACATCGGCCTGCTCGCCGGCCTGGTGTACCTGTTG
GTGGCCGGTGCGGCGCGTTATGGCCTGTGGCCGACGGGGCTGGCGTGGTTGCCTTGGGCGTGTGCGCTGGCCTTTTGCGC
CGCCCTGGGCTACGGCCTGCTCGCCGGTTTCGAGGTGCCGGTGCGACGGGCCTGCGCGATGATCGGCCTGGTGTTGCTGT
GGCGCTTGCGCTTCAAACAGCCGGATCCGTGGTGGGCATGGCTGCTGGCCTTCGTCGGGGTGCTGGTGTTCGACCCGCTC
GCCAGCCTGCGGCCGGGGTTCTGGTTGTCGTTTGCGGCCGTCGCCATATTGATGTTCACCTTTGGCGCTCGCCTTGGGCC
CTGGCGCTGGTGGCAAACCTGGACCCGTGCCCAGTGGCTGGTTGCGGTCGGCCTGTGTCCGTTGCTGTTGATCGTGGGCT
TGCCGGTCAGCCTCAGCGGGCCACTGGTGAACTTGCTCGCGGTGCCCTGGATCAGCCTGCTGGTCTTGCCGCCAGCGCTG
CTCGGCACGGCGTTGTTACCGGTGCCGCTCATCGGTGAAGGCCTGCTGTGGATCGCCGGCGGGTTGCTCGATCTGTTGTT
CAAAGGGCTGGGGCTGATGGCCGGACGAATGCCTGCCTGGGTCCCTGTTGCGGTCCCGCCCTGGGCCCTGGGCATCGCCG
CGCTGGGGGCTTTCTTGCTGCTGTTGCCCAAAGGCGTGCCGCTGCGTGTGCTGGGGTGGCCGATGATGTTGCTGATGGTG
TTTCCACCGCGAGAACACCTGCCGCAAGGGCACGCCGAGGTCTGGCAACTGGACGTGGGCCAAGGCTTGGCGGTGCTGGT
ACGCACCCGGCATCACAGCCTGCTTTACGACGCCGGGCCGCGCTTTGGCGAGGCCGATGTGGGCGAGCGCGTCGTACTGC
CGACCTTGCGCAAACTGGGTGTGCGCGGCTTGGACCTGATGCTCCTCAGCCATGCCGACGCCGATCATGCCGGCGGTGCC
CTGGCCGTGCGCAAGGGACTGCCGACGATGGAAGTCATCAGCGGCGATCCCGACGCGCTGCCCGACGAATTGCAGGCCGG
GCCTTGCGACAGCGGCAGGCGCTGGGAATGGGATGGGGTCGGGTTCGAGTTGTGGCGCTGGGCCTCTGCCGTTGAAAGCA
ACCAGAAGTCCTGCGTCCTGCTGGTGGAGGCTGGCGGAGAACGCCTGCTGTTGACCGGCGACATCGACACCCCTGCCGAG
CGCGCCTTGCTTGACGAGGCCCTGGCGCTACCGATCCAGTGGCTGGCCGCACCTCATCACGGCAGCCGCAGTTCGTCATC
GATGGCATTGTTGTCGCGCCTCAAGCCGCATTCGGTGTTGATCTCCCGCGGGCAGGGCAATGCGTTCGGCCATCCCCATC
CCCAGGTGATGGCCCGGTACCGCCGCTTGGGCCTGGCGACCTACGACAGCGCCGAGCAGGGCGCCATTCGTCTGCAACTG
GGCGCGTTCGAATTACCACGCACCGAGGCCGGGCACCGACGCTACTGGCGCGATCCGCCCGCTGTCGGGACACCGAGGCA
ACATTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (22-166)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-676)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	60.894	95.722	0.583
comA	Ralstonia pseudosolanacearum GMI1000	32.231	100	0.365