Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH83_RS20475 Genome accession   NZ_CP117443
Coordinates   4710908..4711543 (-) Length   211 a.a.
NCBI ID   WP_025214875.1    Uniprot ID   -
Organism   Pseudomonas beijingensis strain FP2262     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4705908..4716543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH83_RS20440 (PSH83_20440) - 4706287..4706757 (-) 471 WP_122565898.1 (2Fe-2S)-binding protein -
  PSH83_RS20445 (PSH83_20445) murB 4707023..4708042 (-) 1020 WP_305490895.1 UDP-N-acetylmuramate dehydrogenase -
  PSH83_RS20450 (PSH83_20450) - 4708039..4708503 (-) 465 WP_122565900.1 low molecular weight protein-tyrosine-phosphatase -
  PSH83_RS20455 (PSH83_20455) kdsB 4708503..4709267 (-) 765 WP_122565901.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH83_RS20460 (PSH83_20460) - 4709264..4709449 (-) 186 WP_003179363.1 Trm112 family protein -
  PSH83_RS20465 (PSH83_20465) lpxK 4709473..4710483 (-) 1011 WP_122565902.1 tetraacyldisaccharide 4'-kinase -
  PSH83_RS20470 (PSH83_20470) - 4710483..4710911 (-) 429 WP_053123850.1 biopolymer transporter ExbD -
  PSH83_RS20475 (PSH83_20475) exbB 4710908..4711543 (-) 636 WP_025214875.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH83_RS20480 (PSH83_20480) comA 4711639..4713885 (-) 2247 WP_305467887.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH83_RS20485 (PSH83_20485) - 4714030..4714545 (+) 516 WP_122565904.1 DUF2062 domain-containing protein -
  PSH83_RS20490 (PSH83_20490) - 4714724..4715503 (-) 780 WP_041476072.1 ABC transporter permease -
  PSH83_RS20495 (PSH83_20495) - 4715506..4716438 (-) 933 WP_305490896.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22799.88 Da        Isoelectric Point: 7.3613

>NTDB_id=785237 PSH83_RS20475 WP_025214875.1 4710908..4711543(-) (exbB) [Pseudomonas beijingensis strain FP2262]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAAARVIHELERYISTLGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGGKQ

Nucleotide


Download         Length: 636 bp        

>NTDB_id=785237 PSH83_RS20475 WP_025214875.1 4710908..4711543(-) (exbB) [Pseudomonas beijingensis strain FP2262]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGTGCCAGCCGCGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTGAACAAGGACAAGCTCAAGGAGCTGCGGGCCAGCTCGCCGCTCGGGGAGGTCCTCGCCGCTGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCATGAACTGGAACGCTACAT
CAGTACCCTGGGCACCATCGCCGCCATGTCCCCGCTGCTGGGCCTGCTGGGAACGGTGCTGGGCATGATCGACATCTTCA
GCGCGTTTACCGGCTCCGGCATGACCACGAATGCCGCGGTACTGGCGGGCGGGATTTCCAAGGCCCTGATCACCACCGCC
GCCGGCCTGATGGTCGGTATCCCTGCCGTGTTCTTCCATCGGTTCCTGCAACGCCGCGTCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAGGGTGATCGTGACGTGGACCTGGCTGGGGGCAAGCAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.762

99.526

0.844