Detailed information NTG0785167

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PSH86_RS26080
• Genome accession: NZ_CP117440
• Coordinates: 5864558..5865904 (+)
• Length: 448 a.a.
• NCBI ID: WP_163856580.1
• Uniprot ID: -
• Organism: Pseudomonas sp. FP2300
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5859558..5870904

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH86_RS26055 (PSH86_26050)	pgeF	5859771..5860496 (-)	726	WP_305485885.1	peptidoglycan editing factor PgeF	-
PSH86_RS26060 (PSH86_26055)	rluD	5860493..5861455 (-)	963	WP_116833478.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PSH86_RS26065 (PSH86_26060)	-	5861607..5862623 (+)	1017	WP_092204245.1	outer membrane protein assembly factor BamD	-
PSH86_RS26070 (PSH86_26065)	-	5862749..5862982 (+)	234	WP_109756371.1	PP0621 family protein	-
PSH86_RS26075 (PSH86_26070)	pilS	5862972..5864561 (+)	1590	WP_109756372.1	nitrogen regulation protein NR(II)	Regulator
PSH86_RS26080 (PSH86_26075)	pilR	5864558..5865904 (+)	1347	WP_163856580.1	sigma-54 dependent transcriptional regulator	Regulator
PSH86_RS26085 (PSH86_26080)	-	5865990..5866355 (-)	366	WP_305485894.1	DUF6124 family protein	-
PSH86_RS26090 (PSH86_26085)	thiO	5867596..5868696 (-)	1101	WP_305485897.1	glycine oxidase ThiO	-
PSH86_RS26095 (PSH86_26090)	-	5868753..5869154 (-)	402	WP_134925875.1	type IV pilin protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50158.55 Da
• Isoelectric Point: 5.9858

>NTDB_id=785167 PSH86_RS26080 WP_163856580.1 5864558..5865904(+) (pilR) [Pseudomonas sp. FP2300]
MNIRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQSLLAGDTFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVSSALRLPPVALPASTIERCLLGDSPPMRNVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRSNQGFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIEPLA
NHMLQRLAANTGSPPAKLHPQALDALRNYRFPGNVRELENMLERAYTLCEQQQIEADDLRLAEGNSTTEAGNPDLMQVDN
LEDYLEDVERKLILQALEQTRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=785167 PSH86_RS26080 WP_163856580.1 5864558..5865904(+) (pilR) [Pseudomonas sp. FP2300]
TTGAATATTCGCTCACGGCAACGAATCCTGATCGTCGACGACGAACCGGACATCCGCGAACTCCTGGACATTACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTGGCCGAGGCCCAGAGCCTGCTGGCGGGGGATACCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAGCACATCCAGCAGCGCTACCCGCAACTGCCC
GTGGCGATGATCACTGCCTACGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAA
GCCGGTCGACCTGGGTCGGTTGCGGGAGCTGGTCAGCAGCGCCCTGCGCCTGCCGCCGGTCGCTCTTCCGGCAAGCACTA
TCGAGCGTTGCCTGCTGGGTGACTCCCCGCCGATGCGCAATGTGCGCAAACAGATCGAAAAACTCGCTCGCAGCCAGGCA
CCGGTGTACATCAGCGGGGAATCGGGCTGCGGCAAGGAACTGGTCGCCCGGCTGATCCACGAACAGGGGCCCCGTTCCAA
CCAGGGTTTTGTGCCAGTCAACTGTGGGGCGATTCCCACTGAGCTGATGGAAAGCGAGTTTTTTGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAAGACAAGCCCGGGCTGTTCCAGGCCGCCCACGGCGGGACCTTATTCCTCGATGAAGTGGCC
GACCTGCCCCTGGCCATGCAGGTCAAGCTACTGCGGGCGATCCAGGAAAAGGCCGTGCGCGCTGTTGGCGGCCAACAGGA
AGAAGTGGTGGATGTGCGAATCCTCTGCGCCACCCACAAGGACCTGGATGCCGAAGTCGCCGCCGGGCGCTTTCGCCAGG
ATTTGTATTACCGGCTAAATGTCATCGAACTGCGCGTCCCGCCCTTGCGCGAACGTCGCGAAGACATCGAACCGCTGGCC
AATCACATGCTCCAGCGTCTGGCGGCCAACACCGGTAGTCCACCGGCCAAGTTGCATCCCCAGGCGTTGGACGCTCTCAG
GAATTACCGCTTCCCGGGCAACGTGCGGGAACTGGAGAACATGCTTGAACGTGCCTACACCCTTTGCGAACAGCAACAAA
TCGAAGCCGACGACCTGCGCCTGGCCGAGGGTAATAGTACTACTGAGGCGGGCAATCCCGATTTGATGCAGGTCGACAAC
CTGGAGGATTACCTGGAAGACGTCGAGCGCAAGCTCATCCTCCAGGCCCTGGAGCAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGTTGGGGTTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Response regulator receiver domain (Response_reg) (9-118)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.378	99.107	0.777
pilR	Acinetobacter baumannii strain A118	49.455	100	0.507