Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PSH86_RS26075 Genome accession   NZ_CP117440
Coordinates   5862972..5864561 (+) Length   529 a.a.
NCBI ID   WP_109756372.1    Uniprot ID   -
Organism   Pseudomonas sp. FP2300     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5857972..5869561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH86_RS26055 (PSH86_26050) pgeF 5859771..5860496 (-) 726 WP_305485885.1 peptidoglycan editing factor PgeF -
  PSH86_RS26060 (PSH86_26055) rluD 5860493..5861455 (-) 963 WP_116833478.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PSH86_RS26065 (PSH86_26060) - 5861607..5862623 (+) 1017 WP_092204245.1 outer membrane protein assembly factor BamD -
  PSH86_RS26070 (PSH86_26065) - 5862749..5862982 (+) 234 WP_109756371.1 PP0621 family protein -
  PSH86_RS26075 (PSH86_26070) pilS 5862972..5864561 (+) 1590 WP_109756372.1 nitrogen regulation protein NR(II) Regulator
  PSH86_RS26080 (PSH86_26075) pilR 5864558..5865904 (+) 1347 WP_163856580.1 sigma-54 dependent transcriptional regulator Regulator
  PSH86_RS26085 (PSH86_26080) - 5865990..5866355 (-) 366 WP_305485894.1 DUF6124 family protein -
  PSH86_RS26090 (PSH86_26085) thiO 5867596..5868696 (-) 1101 WP_305485897.1 glycine oxidase ThiO -
  PSH86_RS26095 (PSH86_26090) - 5868753..5869154 (-) 402 WP_134925875.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58881.61 Da        Isoelectric Point: 7.0460

>NTDB_id=785166 PSH86_RS26075 WP_109756372.1 5862972..5864561(+) (pilS) [Pseudomonas sp. FP2300]
MSAETSSPREKQTQRLLRLYHLYRLSIGITLVLLISSKLDNRLLEFANDDLLRSGSWLYLVLNILLVVFLENTRRPARLF
GLALTDVLLLSWLFFAAGGVPSAIGNLLIVSVAIGNTLLRGRVGLLIAAVATIGIVGSTFFLGLSDSNRPSSYLQAGTLG
ALCFAAALLVQGLTRRLEASETLAEQRASEVIGLEALNALILQRMRTGILVLDRERRVQLANESALNLLGMHDLVGQRID
DYSVALVERLQLWLNNPSLRAQSLTISGTGLALQPSFIALGHNEQHQILVFLEDLAQVAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNDADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTTPQRLDLRTWLEQFVRQAHESMAEH
QQLHLSIDPGDYTTLMDPDQLTQVLDNLLRNAWRHSAMAHEQAEAWLKLFIDPHSQLSTLDIIDNGPGVTPEQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=785166 PSH86_RS26075 WP_109756372.1 5862972..5864561(+) (pilS) [Pseudomonas sp. FP2300]
GTGAGCGCTGAGACCTCAAGCCCGCGCGAAAAACAGACGCAGCGTCTGCTGCGTCTCTATCACCTGTACCGCCTGAGCAT
CGGCATCACCCTGGTGCTGCTGATCTCCAGCAAACTGGACAATCGCCTGCTGGAGTTCGCCAACGACGACCTGCTGCGCA
GCGGCAGTTGGTTGTATCTGGTGCTGAACATCCTGCTTGTAGTGTTCCTTGAAAACACTCGCCGCCCTGCCCGGCTGTTC
GGCCTGGCCCTCACCGACGTACTGCTGCTTTCGTGGCTGTTCTTCGCCGCAGGCGGTGTGCCCAGCGCCATCGGCAACCT
GCTCATCGTCTCGGTAGCCATCGGCAATACGCTATTGCGAGGCCGAGTCGGCCTGTTGATCGCCGCTGTCGCCACGATCG
GTATCGTCGGCTCGACTTTCTTCCTCGGCCTGAGCGACTCGAACCGCCCCAGCAGCTACCTGCAAGCCGGGACCCTGGGG
GCACTGTGCTTCGCCGCCGCCCTGCTGGTACAAGGCCTGACCCGACGGCTGGAAGCCAGCGAAACCCTGGCTGAGCAACG
GGCCAGCGAAGTGATCGGCCTCGAAGCACTCAACGCGCTGATCCTGCAGCGCATGCGCACCGGCATCCTGGTGCTGGACC
GCGAACGTCGGGTACAACTGGCCAACGAAAGCGCCTTGAACCTGCTGGGCATGCACGACCTGGTCGGCCAGCGGATCGAT
GACTACTCCGTCGCCCTGGTCGAACGTCTACAACTGTGGCTGAACAACCCTAGCCTGCGCGCGCAGAGCCTGACCATCAG
CGGCACGGGCCTGGCACTGCAACCGAGCTTCATCGCCCTGGGCCACAACGAGCAACATCAGATCCTGGTCTTCCTCGAAG
ACCTGGCCCAGGTTGCGCAGCAGGCCCAACAACTCAAGCTAGCCTCCCTCGGACGCCTGACGGCCGGCATCGCCCACGAA
ATCCGCAACCCCCTGGGCGCCATCAGCCACGCGGCGCAATTGCTGCGCGAATCCGAGGAACTGAACGACGCGGATCGGCG
TCTGACGCAGATTATTCAAGATCACTCTCAACGAATGAATCGCGTCATTGAAAACGTCCTGCAACTGTCTCGCCGCCAGC
AAACCACACCCCAACGCCTCGATCTGCGGACCTGGCTCGAACAGTTCGTCCGACAGGCCCACGAAAGCATGGCCGAGCAC
CAGCAATTGCACCTGAGCATCGATCCGGGCGACTACACCACGCTGATGGACCCCGACCAGTTGACCCAGGTACTCGACAA
CCTGCTGCGCAACGCCTGGCGCCACAGCGCAATGGCCCACGAACAGGCCGAGGCCTGGCTGAAACTGTTCATCGATCCCC
ACAGCCAGCTGTCCACACTGGACATCATCGACAACGGCCCCGGCGTGACTCCAGAACAGCAAGCGCACTTGTTCGAGCCC
TTCTTTACCACCAGCAGCCAGGGCACCGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.47

99.811

0.594