Detailed information NTG0785165

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSH86_RS25980
• Genome accession: NZ_CP117440
• Coordinates: 5848849..5849718 (+)
• Length: 289 a.a.
• NCBI ID: WP_109756362.1
• Uniprot ID: -
• Organism: Pseudomonas sp. FP2300
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5843849..5854718

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH86_RS25955 (PSH86_25950)	-	5844038..5844334 (+)	297	WP_305485864.1	DUF2845 domain-containing protein	-
PSH86_RS25960 (PSH86_25955)	-	5844648..5845001 (-)	354	WP_109756359.1	BON domain-containing protein	-
PSH86_RS25965 (PSH86_25960)	-	5845283..5845702 (-)	420	WP_134925863.1	pilin	-
PSH86_RS25970 (PSH86_25965)	pilB	5845927..5847627 (+)	1701	WP_109756360.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PSH86_RS25975 (PSH86_25970)	pilC	5847630..5848847 (+)	1218	WP_109756361.1	type II secretion system F family protein	Machinery gene
PSH86_RS25980 (PSH86_25975)	pilD	5848849..5849718 (+)	870	WP_109756362.1	A24 family peptidase	Machinery gene
PSH86_RS25985 (PSH86_25980)	coaE	5849718..5850341 (+)	624	WP_305485871.1	dephospho-CoA kinase	-
PSH86_RS25990 (PSH86_25985)	yacG	5850338..5850544 (+)	207	WP_109756364.1	DNA gyrase inhibitor YacG	-
PSH86_RS25995 (PSH86_25990)	-	5850541..5850756 (-)	216	WP_013694234.1	hypothetical protein	-
PSH86_RS26000 (PSH86_25995)	-	5850820..5851506 (-)	687	WP_116833474.1	energy-coupling factor ABC transporter permease	-
PSH86_RS26005 (PSH86_26000)	-	5851652..5852278 (+)	627	WP_003205682.1	DUF1780 domain-containing protein	-
PSH86_RS26010 (PSH86_26005)	-	5852275..5852802 (+)	528	WP_116833475.1	MOSC domain-containing protein	-
PSH86_RS26015 (PSH86_26010)	-	5852855..5853028 (+)	174	WP_003185543.1	DUF3094 domain-containing protein	-
PSH86_RS26020 (PSH86_26015)	-	5853089..5854387 (+)	1299	WP_305485879.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31925.09 Da
• Isoelectric Point: 7.7097

>NTDB_id=785165 PSH86_RS25980 WP_109756362.1 5848849..5849718(+) (pilD) [Pseudomonas sp. FP2300]
MPLSEFFVLYPLAFVLVAALLGLIIGSFLNVLVWRLPKMLDREWRLQAHDLLGLPAETPGPIYNLMLPHSQCPHCGHRIR
AWENIPLLSYLMLRGRCSSCAAPIGRRYPLTELACGALSAFVAWHFGFGWQAAMVMVLSWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF

Nucleotide

• Length: 870 bp

>NTDB_id=785165 PSH86_RS25980 WP_109756362.1 5848849..5849718(+) (pilD) [Pseudomonas sp. FP2300]
ATGCCCCTGAGCGAATTCTTCGTGCTGTATCCCCTGGCTTTCGTGCTCGTTGCGGCACTGCTCGGTCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCAAAGATGCTCGACCGCGAATGGCGCCTGCAAGCCCACGACCTGCTGGGCC
TGCCGGCTGAAACCCCGGGCCCGATCTATAACCTGATGCTGCCCCATTCCCAATGCCCGCACTGCGGCCATCGCATCCGC
GCCTGGGAAAACATTCCGCTGCTCAGCTACCTGATGCTGCGCGGTCGCTGTTCGAGCTGCGCCGCGCCCATCGGCAGGCG
TTACCCCCTGACCGAACTGGCCTGCGGCGCGCTGTCAGCGTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCAAGCGGCGA
TGGTGATGGTGTTGTCCTGGGGCCTGCTGGGCATGAGCCTGATCGACGCCGAACATCAATTGCTGCCCGATACCCTGGTA
TTGCCGTTATTGTGGCTGGGCTTGATCGTCAACAGCTTCGGGCTGTTCGTTTCCTTGAACCAGGCGATGTGGGGCGCGGT
GGCCGGTTATCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAGGGCATGGGCTACGGGGATT
TCAAGCTGCTGGCGATGCTGGGGGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGTTGTTGTTGTCGTCGCTGGTGGGC
GCCGTTATCGGGGTCATCGTGCTGCGCCTGCGGGATGCCCCAGGGTCGACGCAGATCCCCTTTGGGCCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.817	98.27	0.519
pilD	Vibrio campbellii strain DS40M4	50.526	98.616	0.498
pilD	Acinetobacter baumannii D1279779	48.057	97.924	0.471
pilD	Acinetobacter nosocomialis M2	48.043	97.232	0.467
pilD	Neisseria gonorrhoeae MS11	47.038	99.308	0.467