Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSH59_RS15305 Genome accession   NZ_CP117439
Coordinates   3365208..3367433 (-) Length   741 a.a.
NCBI ID   WP_305393087.1    Uniprot ID   -
Organism   Pseudomonas sp. FP2309     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3360208..3372433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH59_RS15270 (PSH59_15265) murB 3360579..3361598 (-) 1020 WP_248079419.1 UDP-N-acetylmuramate dehydrogenase -
  PSH59_RS15275 (PSH59_15270) - 3361595..3362059 (-) 465 WP_305393083.1 low molecular weight protein-tyrosine-phosphatase -
  PSH59_RS15280 (PSH59_15275) kdsB 3362059..3362823 (-) 765 WP_305393084.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH59_RS15285 (PSH59_15280) - 3362820..3363005 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH59_RS15290 (PSH59_15285) lpxK 3363029..3364039 (-) 1011 WP_305393085.1 tetraacyldisaccharide 4'-kinase -
  PSH59_RS15295 (PSH59_15290) - 3364039..3364467 (-) 429 WP_305393086.1 biopolymer transporter ExbD -
  PSH59_RS15300 (PSH59_15295) exbB 3364464..3365099 (-) 636 WP_248079429.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH59_RS15305 (PSH59_15300) comA 3365208..3367433 (-) 2226 WP_305393087.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH59_RS15310 (PSH59_15305) - 3367569..3368090 (+) 522 WP_305393088.1 DUF2062 domain-containing protein -
  PSH59_RS15315 (PSH59_15310) - 3368087..3369454 (-) 1368 WP_305393089.1 sensor histidine kinase -
  PSH59_RS15320 (PSH59_15315) - 3369444..3370172 (-) 729 WP_305393090.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80822.79 Da        Isoelectric Point: 10.6580

>NTDB_id=785132 PSH59_RS15305 WP_305393087.1 3365208..3367433(-) (comA) [Pseudomonas sp. FP2309]
MKTGMFALALGLLALRFLPALPATGWLIAMLVLALMLLPFRTYPVAFFLMGLGWACLSAQWALDDRLRPALDGQTRWLEG
RVIGLPQQTASGVRFELADSRSRNARLPTRMRVSWHGGPAVRSGERWRLAVTLKRPSGLLNFHGFDHEAWLLAQRVGATG
SVKDGERLSPARHAWRDTLRQRLLSVDAWGREAGLAALVLGDGSGMAAEDWQVLQDTGTVHLLVISGQHIGLLAGLVYGL
VALLARYGCWPRTWPWLPWACGLAFAAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGFWWPLLLALDGVLVLEPL
ASLQPGFWLSFSAVAVLIFAFGGRLGPWRVWQAWTRPQWLIAIGLFPVLLLLGLPISVSAPLANLVAVPWISLVVLPLAL
LGTVLLRLPCVGENLLWLAGGALDGLFRGLAWLAGQVPAWIPAEVPLVYWWVSLAGALLLLLPSGVPLRLLGWPMLLLAV
FPPRELVPHGRAEVVQLDVGQGQAVILRTRHHTLLYDAGLRSGAFDLGARVVLPALKKLGVEALDLMVLSHADADHAGGA
AAVARGLPVKRVVGGETEGLPAFLHTQPCVSGERWTWDGVSFELWQWPDAIAGNPKSCVLQVQANGERLLLTGDIDRDAE
RAFLASSLAVRTDWLQAPHHGSRSSSSRPFLQRLAPTSVLISRGRSNAFGHPHAQVMQRYEALGSRVYDTAEQGAVRLQL
GAFAPPDVARSQRRFWREALP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=785132 PSH59_RS15305 WP_305393087.1 3365208..3367433(-) (comA) [Pseudomonas sp. FP2309]
ATGAAAACAGGGATGTTCGCATTGGCGCTGGGGCTGCTCGCCCTGCGTTTTTTGCCCGCGCTGCCAGCTACGGGGTGGCT
GATAGCCATGTTGGTGTTGGCACTCATGTTGCTGCCGTTTCGCACCTATCCCGTGGCGTTTTTCCTGATGGGGCTGGGCT
GGGCGTGCCTCAGCGCGCAATGGGCGCTGGATGACCGACTGCGGCCGGCGCTCGACGGTCAGACGCGCTGGCTGGAGGGA
CGTGTGATCGGCTTGCCGCAGCAGACCGCCAGCGGCGTGCGTTTTGAACTGGCCGACAGCCGGTCGCGCAACGCGCGATT
GCCCACGCGCATGCGGGTCTCCTGGCACGGCGGGCCAGCGGTACGTAGCGGAGAGCGCTGGCGGTTGGCGGTGACACTCA
AGCGGCCGTCCGGCTTGCTGAATTTCCACGGCTTTGATCACGAGGCCTGGCTGCTGGCCCAGCGCGTCGGCGCCACGGGG
TCGGTCAAGGATGGTGAGCGGTTGTCGCCGGCGCGGCATGCCTGGCGCGATACGCTCCGCCAACGCCTGCTGAGCGTGGA
TGCCTGGGGCCGAGAAGCCGGGTTGGCCGCATTGGTGCTGGGCGATGGCTCCGGGATGGCGGCCGAAGATTGGCAGGTAT
TGCAGGACACCGGAACGGTGCACCTGCTGGTGATTTCCGGCCAACACATCGGCCTGCTCGCCGGGTTGGTTTATGGGCTG
GTGGCGCTGCTGGCACGTTATGGTTGCTGGCCGCGCACCTGGCCATGGCTGCCGTGGGCCTGTGGCTTGGCGTTTGCCGC
GGCGCTGGGCTACGGCTTGCTGGCCGGGTTCGGCGTGCCGGTGCAGCGGGCCTGCGTCATGGTGGGGTTGGTGCTTTTAT
GGCGATTGCGCTTTCGCCATCTGGGGTTCTGGTGGCCGTTGCTGCTGGCGCTGGACGGAGTGTTGGTCCTGGAGCCATTG
GCCAGTCTGCAACCTGGATTCTGGCTGTCCTTCTCGGCCGTCGCGGTGTTGATTTTTGCGTTCGGCGGGCGTCTGGGGCC
GTGGCGTGTCTGGCAGGCCTGGACCCGCCCCCAGTGGTTGATCGCCATCGGGCTGTTTCCGGTGTTGCTGCTGCTCGGTT
TACCCATCAGTGTCAGTGCGCCGCTGGCCAATCTGGTCGCCGTGCCGTGGATCAGCCTGGTGGTGTTGCCGCTGGCACTG
CTGGGGACTGTGCTGTTGCGGCTGCCGTGTGTGGGGGAAAACCTATTATGGCTGGCGGGTGGGGCGCTGGATGGGTTGTT
CCGAGGGCTCGCCTGGCTTGCCGGGCAAGTGCCTGCGTGGATCCCGGCGGAGGTGCCTTTGGTGTACTGGTGGGTGAGCC
TGGCGGGCGCGTTGTTATTGCTGCTGCCCAGCGGTGTGCCGTTGCGATTGCTGGGCTGGCCGATGTTGCTGTTGGCGGTC
TTTCCACCGCGTGAACTGGTACCCCATGGGCGGGCAGAGGTGGTGCAACTGGACGTGGGGCAGGGGCAGGCGGTGATCCT
GCGCACCCGCCATCACACCCTGCTTTACGACGCGGGGCTGCGCTCGGGAGCCTTCGACCTGGGCGCGCGCGTGGTGCTGC
CGGCATTGAAAAAATTGGGTGTGGAGGCGCTGGACCTGATGGTGCTCAGCCACGCCGACGCCGACCATGCGGGCGGCGCG
GCGGCCGTTGCCCGGGGGTTGCCGGTCAAGCGCGTCGTGGGTGGCGAAACCGAAGGCTTGCCCGCGTTTCTGCACACACA
ACCCTGTGTCAGCGGTGAGCGCTGGACGTGGGACGGTGTGTCATTCGAACTGTGGCAGTGGCCCGACGCCATCGCGGGTA
ACCCCAAGTCCTGTGTGCTTCAGGTGCAGGCCAATGGCGAGCGGTTGCTGCTCACAGGGGATATTGATCGCGACGCTGAA
CGGGCGTTTCTCGCCTCATCCCTGGCGGTACGCACCGATTGGTTGCAGGCCCCTCACCATGGCAGCCGCAGTTCGTCGTC
GCGGCCTTTCCTGCAACGGCTGGCGCCGACATCCGTGCTGATTTCCCGCGGGCGCAGCAATGCCTTCGGCCATCCGCACG
CGCAGGTCATGCAGCGTTATGAGGCATTGGGCAGCCGTGTCTACGACACTGCCGAGCAGGGGGCCGTACGCCTGCAATTG
GGCGCCTTCGCACCGCCGGATGTTGCGCGCAGTCAACGCCGTTTCTGGCGCGAAGCGTTACCCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-460)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-673)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.196

97.031

0.594
  comA Ralstonia pseudosolanacearum GMI1000

35.019

100

0.374