Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH59_RS15300 Genome accession   NZ_CP117439
Coordinates   3364464..3365099 (-) Length   211 a.a.
NCBI ID   WP_248079429.1    Uniprot ID   -
Organism   Pseudomonas sp. FP2309     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3359464..3370099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH59_RS15265 (PSH59_15260) - 3359846..3360517 (+) 672 WP_248079417.1 Bax inhibitor-1/YccA family protein -
  PSH59_RS15270 (PSH59_15265) murB 3360579..3361598 (-) 1020 WP_248079419.1 UDP-N-acetylmuramate dehydrogenase -
  PSH59_RS15275 (PSH59_15270) - 3361595..3362059 (-) 465 WP_305393083.1 low molecular weight protein-tyrosine-phosphatase -
  PSH59_RS15280 (PSH59_15275) kdsB 3362059..3362823 (-) 765 WP_305393084.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH59_RS15285 (PSH59_15280) - 3362820..3363005 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH59_RS15290 (PSH59_15285) lpxK 3363029..3364039 (-) 1011 WP_305393085.1 tetraacyldisaccharide 4'-kinase -
  PSH59_RS15295 (PSH59_15290) - 3364039..3364467 (-) 429 WP_305393086.1 biopolymer transporter ExbD -
  PSH59_RS15300 (PSH59_15295) exbB 3364464..3365099 (-) 636 WP_248079429.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH59_RS15305 (PSH59_15300) comA 3365208..3367433 (-) 2226 WP_305393087.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH59_RS15310 (PSH59_15305) - 3367569..3368090 (+) 522 WP_305393088.1 DUF2062 domain-containing protein -
  PSH59_RS15315 (PSH59_15310) - 3368087..3369454 (-) 1368 WP_305393089.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22811.95 Da        Isoelectric Point: 6.8765

>NTDB_id=785131 PSH59_RS15300 WP_248079429.1 3364464..3365099(-) (exbB) [Pseudomonas sp. FP2309]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKEKLKALRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGAGMSTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=785131 PSH59_RS15300 WP_248079429.1 3364464..3365099(-) (exbB) [Pseudomonas sp. FP2309]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCTTGAGTTCCATCGCCGCACTCGGCATCGTTGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTGACCCCCGAGCATCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AACAGCTGGACAAGGAAAAACTCAAGGCCCTGCGCGCCGACTCACCGCTGGGTGAAATCCTCGCCGCTGGTCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTTATCCATGAGCTGGAGCGCTACAT
CAATGCCCTCGGCACCATTGCCGCCATGGCCCCGCTGCTGGGGTTGCTGGGGACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGGGCGGGCATGAGCACCAACGCCGCAGTGCTGGCCGGTGGTATCTCCAAGGCGTTGATCACCACCGCA
GCCGGCCTGATGGTGGGTATTCCATCGGTGTTCTTCCACCGTTTCCTGCAACGGCGCATCGATGAACTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAGTTGGTGGAAGTGGTGCAGGGCGACCGTGATGTGGACCTGGTTGGGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844