Detailed information NTG0785103

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSH70_RS04010
• Genome accession: NZ_CP117438
• Coordinates: 931128..931994 (-)
• Length: 288 a.a.
• NCBI ID: WP_305439934.1
• Uniprot ID: -
• Organism: Pseudomonas fluorescens strain FP2327
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 926128..936994

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSH70_RS03970 (PSH70_03970)	-	926526..927824 (-)	1299	WP_053254333.1	NAD(P)/FAD-dependent oxidoreductase	-
PSH70_RS03975 (PSH70_03975)	-	927885..928058 (-)	174	WP_016976295.1	DUF3094 family protein	-
PSH70_RS03980 (PSH70_03980)	-	928148..928777 (-)	630	WP_053254334.1	DUF1780 domain-containing protein	-
PSH70_RS03985 (PSH70_03985)	-	928881..929348 (+)	468	WP_069553301.1	FAD/FMN-containing dehydrogenase	-
PSH70_RS03990 (PSH70_03990)	-	929345..930034 (+)	690	WP_053254336.1	energy-coupling factor ABC transporter permease	-
PSH70_RS03995 (PSH70_03995)	-	930099..930314 (+)	216	WP_003171680.1	hypothetical protein	-
PSH70_RS04000 (PSH70_04000)	yacG	930311..930511 (-)	201	WP_053254337.1	DNA gyrase inhibitor YacG	-
PSH70_RS04005 (PSH70_04005)	coaE	930508..931131 (-)	624	WP_053254338.1	dephospho-CoA kinase	-
PSH70_RS04010 (PSH70_04010)	pilD	931128..931994 (-)	867	WP_305439934.1	A24 family peptidase	Machinery gene
PSH70_RS04015 (PSH70_04015)	pilC	931991..933199 (-)	1209	WP_053254340.1	type II secretion system F family protein	Machinery gene
PSH70_RS04020 (PSH70_04020)	-	933402..933815 (+)	414	WP_069553305.1	pilin	-
PSH70_RS04030 (PSH70_04030)	-	934123..934428 (+)	306	WP_053254342.1	DUF6388 family protein	-
PSH70_RS04035 (PSH70_04035)	nadC	934475..935323 (-)	849	WP_069553306.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31791.01 Da
• Isoelectric Point: 8.5921

>NTDB_id=785103 PSH70_RS04010 WP_305439934.1 931128..931994(-) (pilD) [Pseudomonas fluorescens strain FP2327]
MSLLPSAQPWGFVGMAFVLGLIVGSFINVLVWRLPKRLEREWRAQAQEVLGLPADPASPTYNLMRRNACCMYCAQPTRPW
ENIPLLGYLILRGRCAHCHEPIGRRYPATELACALGSAIVALHFGFGWQAGAVMVLSWGLLAMSLIDVDHQLLPDVLVLP
LLWLGLILNSFDVLTTLPNALWGAVIGYMSLWTVFWLFKLITGKDGMGYGDFKLLALLGAWGGWQILPMTLLIASLLGVL
AGLILMRLRRSQASIPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=785103 PSH70_RS04010 WP_305439934.1 931128..931994(-) (pilD) [Pseudomonas fluorescens strain FP2327]
TTGAGCCTGCTGCCCAGCGCACAGCCATGGGGTTTTGTCGGGATGGCGTTCGTTCTGGGGCTGATCGTCGGCAGCTTCAT
CAACGTGCTGGTGTGGCGCCTGCCAAAGAGGCTCGAGCGCGAATGGCGTGCCCAAGCCCAGGAAGTGCTGGGCTTGCCTG
CCGACCCCGCCAGCCCCACGTACAACCTGATGCGCCGCAACGCCTGCTGCATGTATTGCGCGCAGCCGACTCGCCCCTGG
GAAAATATCCCGCTGCTCGGTTACCTGATACTCAGAGGCCGTTGCGCCCATTGCCATGAACCTATCGGTCGCCGCTACCC
CGCCACCGAGCTGGCTTGCGCGCTGGGCTCGGCCATTGTTGCCTTGCATTTCGGTTTCGGCTGGCAAGCGGGCGCGGTGA
TGGTGTTGAGCTGGGGGTTGCTGGCCATGAGCCTGATCGACGTGGATCATCAATTATTGCCGGACGTTCTGGTGCTGCCG
CTGCTATGGCTCGGGCTGATCCTCAATAGCTTCGACGTGTTGACGACACTGCCCAATGCGCTTTGGGGCGCAGTCATAGG
CTATATGAGCCTGTGGACGGTGTTCTGGTTGTTCAAGCTGATCACCGGCAAGGACGGCATGGGCTACGGCGACTTCAAGT
TATTGGCCCTGCTCGGTGCTTGGGGTGGCTGGCAGATTCTGCCGATGACGCTACTGATCGCCTCGCTGCTGGGCGTGCTC
GCCGGCCTGATCCTGATGCGCTTGCGCAGGTCCCAGGCTTCGATTCCGATGCCGTTTGGTCCCTGTCTGGCAATTGCCGG
CTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50	96.528	0.483
pilD	Vibrio campbellii strain DS40M4	47.312	96.875	0.458
pilD	Acinetobacter baumannii D1279779	47.253	94.792	0.448
pilD	Acinetobacter nosocomialis M2	47.253	94.792	0.448
pilD	Neisseria gonorrhoeae MS11	45.185	93.75	0.424