Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSH81_RS16190 Genome accession   NZ_CP117437
Coordinates   3629525..3631777 (-) Length   750 a.a.
NCBI ID   WP_305391078.1    Uniprot ID   -
Organism   Pseudomonas sp. FP2335     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3624525..3636777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH81_RS16155 (PSH81_16150) murB 3624956..3625975 (-) 1020 WP_305391077.1 UDP-N-acetylmuramate dehydrogenase -
  PSH81_RS16160 (PSH81_16155) - 3625972..3626436 (-) 465 WP_226456358.1 low molecular weight protein-tyrosine-phosphatase -
  PSH81_RS16165 (PSH81_16160) kdsB 3626436..3627200 (-) 765 WP_192296521.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH81_RS16170 (PSH81_16165) - 3627197..3627382 (-) 186 WP_192296522.1 Trm112 family protein -
  PSH81_RS16175 (PSH81_16170) lpxK 3627407..3628417 (-) 1011 WP_226456359.1 tetraacyldisaccharide 4'-kinase -
  PSH81_RS16180 (PSH81_16175) - 3628417..3628845 (-) 429 WP_192296524.1 biopolymer transporter ExbD -
  PSH81_RS16185 (PSH81_16180) exbB 3628842..3629477 (-) 636 WP_185706715.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH81_RS16190 (PSH81_16185) comA 3629525..3631777 (-) 2253 WP_305391078.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH81_RS16195 (PSH81_16190) - 3631913..3632428 (+) 516 WP_192296526.1 DUF2062 domain-containing protein -
  PSH81_RS16200 (PSH81_16195) - 3632414..3633802 (-) 1389 WP_305391079.1 sensor histidine kinase -
  PSH81_RS16205 (PSH81_16200) - 3633789..3634517 (-) 729 WP_305391080.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 750 a.a.        Molecular weight: 81362.36 Da        Isoelectric Point: 10.8194

>NTDB_id=785086 PSH81_RS16190 WP_305391078.1 3629525..3631777(-) (comA) [Pseudomonas sp. FP2335]
MRAGMFAFALGLLTLRFLPVLPPVGLLLAMPVVALMLLPFRTYCLAFFLFGLSWACLSAQWALDDRLRPALDGQTRWLEG
RVVGLPQQTGSGVRFELADSRSRNARLPKRIQVSWHAGPAVHSGERWRVAVTLKRPAGLLNFHGFDREAWLLAHRIGATG
SVKDGMRLSPARNAWRDSVRQRLSSVDAQGREAGLAALVLGDGSALAPQDWQVLQATGTVHLLVISGQHIGLLSGLIYAL
VAGLARYGYWPRALPWLPWACGLAFAAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLALNGVLVLEPL
ASLQPGFWLSFAAVAVLVLAFSGRLGAWSVWQAWTRAQWLIALGLFPVLLALGLPISLSAPLANLFAVPWISLVVLPLAL
LGTALLPLPWVGEQLLWLAGAALDGLFRGLALLAEQLPAWTPAEVPLGCWLISLSGAVLLLLPKGVPLRLLGWPMLLLAV
FPPRESVPHGQVEVLQLDVGQGQALILRTRRHTLLYDAGPRSGASDLGASVVLPALKKLGVGRLDMLLLSHADVDHAGGA
AAVARGLAIRRVVGGETERLPTFLGTQPCVSGERWEWDGVAFELWQWSDAVEGNAKSCVLQVQANGERLLLTGDIDRAAE
RALLESPLAVATDWLQAPHHGSRSSSSWPFVQRLSPHSVLISRGRGNAFGHPHPQVLERYQALGSRIYDSAEQGAVRLRL
GAFAPPIVARSQRRFWRDALPFEPKVGEPR

Nucleotide


Download         Length: 2253 bp        

>NTDB_id=785086 PSH81_RS16190 WP_305391078.1 3629525..3631777(-) (comA) [Pseudomonas sp. FP2335]
ATGAGAGCAGGGATGTTCGCGTTTGCACTGGGGTTGTTGACCCTGCGCTTTTTACCGGTGTTGCCGCCTGTCGGCCTGCT
GCTGGCCATGCCAGTGGTGGCGTTGATGTTGTTGCCATTTCGCACCTATTGCCTGGCGTTCTTTCTATTCGGCTTGAGTT
GGGCGTGCCTGAGTGCGCAGTGGGCGCTGGATGATCGCCTTAGGCCAGCACTGGATGGGCAGACACGCTGGCTGGAAGGG
CGTGTCGTCGGGTTGCCGCAGCAGACTGGCAGCGGTGTACGGTTCGAGCTGGCCGACAGTCGCTCGCGCAATGCCCGGTT
GCCCAAGCGTATCCAAGTGTCCTGGCACGCTGGGCCGGCGGTGCACAGCGGTGAACGCTGGCGCGTGGCGGTCACGCTCA
AGCGGCCGGCGGGGTTGCTTAATTTTCATGGCTTTGACCGCGAGGCCTGGTTGCTTGCCCATCGTATTGGCGCCACGGGC
TCGGTAAAGGATGGCATGCGCCTGTCGCCTGCGCGTAACGCTTGGCGCGACAGCGTGCGCCAACGCCTGTCGAGCGTGGA
TGCCCAGGGGCGCGAGGCTGGGTTGGCGGCGTTGGTGCTGGGGGACGGTTCGGCACTGGCGCCGCAGGATTGGCAGGTGT
TGCAAGCCACCGGCACGGTGCACCTGCTGGTGATTTCCGGTCAACACATTGGTTTGCTCTCGGGGTTGATTTACGCGCTG
GTCGCCGGGTTGGCGCGCTACGGCTATTGGCCGCGGGCCCTGCCTTGGCTGCCGTGGGCGTGTGGCTTGGCGTTTGCCGC
TGCGCTGGGCTACGGCTTGCTGGCAGGGTTCGGTGTGCCCGTGCAGCGTGCCTGCGTGATGGTCGGGCTGGTGCTGCTGT
GGCGCTTGCGGTTTCGCCATCTGGGTGCCTGGTGGCCGCTGCTGCTCGCGCTCAATGGGGTATTGGTGCTGGAGCCGTTG
GCCAGTTTGCAGCCTGGATTCTGGTTGTCGTTCGCGGCCGTTGCCGTGTTGGTGCTGGCGTTCAGCGGGCGTTTGGGCGC
TTGGAGTGTGTGGCAGGCGTGGACCCGTGCGCAGTGGCTGATTGCACTCGGTTTGTTTCCGGTATTGCTGGCGCTGGGGC
TGCCGATCAGCCTGAGCGCGCCGTTGGCCAACCTGTTCGCGGTGCCTTGGATCAGCCTGGTGGTGTTGCCGTTGGCGCTG
CTCGGGACTGCGCTCTTGCCGCTGCCATGGGTGGGCGAGCAACTATTGTGGCTGGCCGGTGCTGCGTTGGACGGACTGTT
TCGCGGCCTCGCGTTGCTGGCGGAACAACTGCCGGCCTGGACTCCGGCCGAGGTGCCGCTGGGCTGCTGGCTGATCAGCC
TGTCGGGCGCGGTGTTGTTGCTGTTGCCCAAGGGCGTGCCGTTGCGGCTGCTGGGCTGGCCGATGCTGTTGCTGGCGGTG
TTTCCACCCAGGGAATCAGTGCCCCATGGGCAGGTCGAGGTGCTGCAGTTGGATGTCGGGCAGGGTCAGGCATTGATCCT
GCGCACCCGTCGGCACACCCTGCTTTACGATGCGGGGCCGCGTTCGGGTGCGTCCGATCTGGGCGCCAGCGTGGTGTTGC
CAGCGTTGAAAAAGCTCGGGGTAGGGCGGTTGGACATGCTGCTGCTGAGCCATGCCGACGTCGACCACGCCGGTGGTGCG
GCCGCGGTTGCCCGTGGGTTGGCCATCCGCCGGGTAGTGGGCGGCGAGACCGAAAGGTTGCCGACATTCCTCGGGACCCA
GCCATGCGTGAGCGGCGAGCGTTGGGAGTGGGACGGCGTGGCGTTTGAGTTGTGGCAATGGTCGGACGCGGTTGAAGGCA
ACGCGAAGTCCTGTGTGTTGCAGGTCCAGGCCAATGGCGAGCGCCTGTTGCTGACCGGCGATATTGACCGCGCCGCCGAG
CGGGCCTTGCTTGAGTCACCCCTGGCGGTGGCGACCGACTGGCTGCAGGCACCCCACCATGGCAGTCGCAGTTCTTCGTC
CTGGCCCTTTGTACAAAGGCTTTCGCCCCACTCGGTGTTGATCTCCCGCGGCCGTGGCAATGCGTTTGGCCATCCTCATC
CGCAAGTGCTGGAGCGCTACCAGGCGCTGGGTAGCCGGATCTACGACAGCGCCGAGCAAGGGGCCGTGCGTCTGCGACTG
GGCGCCTTCGCACCGCCGATTGTTGCGCGCAGTCAACGTCGTTTCTGGCGTGATGCATTACCCTTTGAGCCTAAGGTCGG
CGAACCCCGCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(23-165)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-661)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.388

95.867

0.569
  comA Ralstonia pseudosolanacearum GMI1000

35.024

100

0.396