Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH81_RS16185 Genome accession   NZ_CP117437
Coordinates   3628842..3629477 (-) Length   211 a.a.
NCBI ID   WP_185706715.1    Uniprot ID   -
Organism   Pseudomonas sp. FP2335     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3623842..3634477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH81_RS16150 (PSH81_16145) - 3624222..3624893 (+) 672 WP_192296518.1 Bax inhibitor-1/YccA family protein -
  PSH81_RS16155 (PSH81_16150) murB 3624956..3625975 (-) 1020 WP_305391077.1 UDP-N-acetylmuramate dehydrogenase -
  PSH81_RS16160 (PSH81_16155) - 3625972..3626436 (-) 465 WP_226456358.1 low molecular weight protein-tyrosine-phosphatase -
  PSH81_RS16165 (PSH81_16160) kdsB 3626436..3627200 (-) 765 WP_192296521.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH81_RS16170 (PSH81_16165) - 3627197..3627382 (-) 186 WP_192296522.1 Trm112 family protein -
  PSH81_RS16175 (PSH81_16170) lpxK 3627407..3628417 (-) 1011 WP_226456359.1 tetraacyldisaccharide 4'-kinase -
  PSH81_RS16180 (PSH81_16175) - 3628417..3628845 (-) 429 WP_192296524.1 biopolymer transporter ExbD -
  PSH81_RS16185 (PSH81_16180) exbB 3628842..3629477 (-) 636 WP_185706715.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH81_RS16190 (PSH81_16185) comA 3629525..3631777 (-) 2253 WP_305391078.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH81_RS16195 (PSH81_16190) - 3631913..3632428 (+) 516 WP_192296526.1 DUF2062 domain-containing protein -
  PSH81_RS16200 (PSH81_16195) - 3632414..3633802 (-) 1389 WP_305391079.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22959.10 Da        Isoelectric Point: 6.8771

>NTDB_id=785085 PSH81_RS16185 WP_185706715.1 3628842..3629477(-) (exbB) [Pseudomonas sp. FP2335]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=785085 PSH81_RS16185 WP_185706715.1 3628842..3629477(-) (exbB) [Pseudomonas sp. FP2335]
GTGTGGGAATTGGTCAAATCCGGTGGTTGGATGATGTTGCCGATCATCATGAGCTCCATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAACATCTGCTGGGGCAGGTGTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGGAAAAACTCAAGGAACTGCGCGCCAACTCACCTCTAGGTGAAATCCTCGCCGCCGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCCGCCCGGGTCATTCATGAGCTGGAGCGCTATAT
CAATGCCCTCGGCACCATTGCCGCCATGGCCCCGTTGCTCGGTTTGCTGGGCACCGTTCTGGGCATGATCGACATCTTCA
GTTCGTTCATGGGCTCGGGCATGACCACCAACGCTGCCGTACTGGCCGGTGGTATTTCCAAGGCACTGATAACCACGGCC
GCCGGCCTGATGGTCGGGATTCCTTCGGTGTTCTTCCACCGTTTCCTGCAACGGCGCATCGATGAATTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGGTACAGGGCGACCGTGATGTGGATCTGGTCGAGGGTCGAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848