Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSH96_RS17080 Genome accession   NZ_CP117436
Coordinates   3792877..3795102 (-) Length   741 a.a.
NCBI ID   WP_305454022.1    Uniprot ID   -
Organism   Pseudomonas sp. FP2338     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3787877..3800102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH96_RS17045 (PSH96_17040) murB 3788247..3789266 (-) 1020 WP_305454018.1 UDP-N-acetylmuramate dehydrogenase -
  PSH96_RS17050 (PSH96_17045) - 3789263..3789727 (-) 465 WP_305454019.1 low molecular weight protein-tyrosine-phosphatase -
  PSH96_RS17055 (PSH96_17050) kdsB 3789727..3790491 (-) 765 WP_058419882.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH96_RS17060 (PSH96_17055) - 3790488..3790673 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH96_RS17065 (PSH96_17060) lpxK 3790697..3791707 (-) 1011 WP_305454020.1 tetraacyldisaccharide 4'-kinase -
  PSH96_RS17070 (PSH96_17065) - 3791707..3792135 (-) 429 WP_305454021.1 biopolymer transporter ExbD -
  PSH96_RS17075 (PSH96_17070) exbB 3792132..3792767 (-) 636 WP_016969293.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH96_RS17080 (PSH96_17075) comA 3792877..3795102 (-) 2226 WP_305454022.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH96_RS17085 (PSH96_17080) - 3795237..3795752 (+) 516 WP_056861726.1 DUF2062 domain-containing protein -
  PSH96_RS17090 (PSH96_17085) - 3795756..3797114 (-) 1359 WP_305460094.1 sensor histidine kinase -
  PSH96_RS17095 (PSH96_17090) - 3797101..3797826 (-) 726 WP_305454023.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 79835.82 Da        Isoelectric Point: 11.0499

>NTDB_id=785063 PSH96_RS17080 WP_305454022.1 3792877..3795102(-) (comA) [Pseudomonas sp. FP2338]
MRTGMFAFGLGLLSLRFLPALPSTAWLLAMLVAALMLLPFRAYPLAFLLLGVSWACMSAQWALDDRLRPDLDGQTRWIEG
RVIGLPQTTGTGVRFELADSRSRKARLPKRIRLSWHGGPQVNSGERWRLAVTLKRPAGLLNFQGFDYEAWLLAQRIGATG
SVKDGQRLAPARHAWRDSVRQRLLAVDAQGREAGLAALVLGDGSGLATEDWRVLQDTGTVHLLVISGQHIGLLAGLIYAL
VAGLARYGCWPRALPWLPWACGLAFTAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLAFNAVLVLEPL
ASLQPGFWLSFAAVAVLVLAFSGRLGAWSVWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPVANLFAVPWISLVVLPLAL
LGTALLAVPWVGEGVLWLAGGALDGLFTSLALLAGLRAAWVPADVPLGYWLISVAGAVLLLLPKGVPLRLLGWPMLLLAV
FPPKTLVPHGQVEVVQLDIGQGLAVILRTRHHAMLYDVGPRSGAVDLGARVVLPSLQKLGVAALDAMVISHAHADHAGGA
AAVARVLPVGRVIGGETEGLPTFLAAQPCNSGERWEWDGVSFEVWQWPGATSSNPKSCVLQVQARGERLLLTGDIDEAAE
KAFLASPLAVPTDWLQAPHHGSRSSSSLAFLQRLAPKAVLISRGRGNAFGHPHPQVTARYQALGSRVYDSAKQGAVRVQL
GGFRAPVVARSQRRFWREALP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=785063 PSH96_RS17080 WP_305454022.1 3792877..3795102(-) (comA) [Pseudomonas sp. FP2338]
ATGAGAACAGGGATGTTCGCGTTCGGACTTGGCTTACTTTCGCTGCGGTTTTTACCCGCACTGCCGTCCACCGCTTGGCT
ATTGGCCATGCTGGTAGCGGCCTTGATGTTGCTGCCGTTTCGTGCCTACCCGCTGGCATTTTTGCTGTTGGGCGTGAGCT
GGGCGTGCATGAGTGCGCAATGGGCGTTGGACGACCGGCTAAGGCCGGATCTGGACGGTCAGACCCGTTGGATTGAGGGG
CGCGTAATCGGGTTGCCGCAAACCACCGGCACCGGTGTGCGCTTCGAACTGGCCGACAGCCGGTCACGCAAGGCCAGGCT
GCCCAAGCGTATCCGCCTGTCCTGGCATGGCGGCCCGCAGGTTAACAGCGGCGAGCGCTGGCGGCTGGCGGTCACGCTCA
AGCGGCCGGCGGGCCTGCTCAATTTCCAGGGGTTTGATTACGAGGCTTGGCTGCTGGCCCAGCGCATCGGCGCCACTGGT
TCGGTGAAAGACGGCCAGCGCCTGGCGCCGGCCCGCCATGCCTGGCGTGACAGCGTCCGGCAACGCCTGCTGGCGGTGGA
TGCTCAGGGCCGCGAGGCGGGGCTGGCGGCCTTGGTGCTGGGCGACGGCTCGGGGTTGGCAACCGAGGATTGGCGGGTGT
TGCAGGACACCGGCACGGTGCACCTGCTGGTGATTTCCGGCCAGCACATTGGCTTGCTGGCCGGTTTGATCTACGCCCTG
GTGGCCGGGCTGGCGCGCTACGGCTGCTGGCCCCGCGCTTTGCCCTGGCTGCCATGGGCCTGCGGCCTGGCATTTACTGC
CGCGCTGGGGTATGGCCTGCTGGCGGGTTTCGGTGTGCCGGTGCAACGGGCCTGCGTGATGGTCGGGTTGGTGCTGCTGT
GGCGTTTGCGGTTTCGCCACCTGGGTGTGTGGTGGCCGTTATTACTGGCGTTCAATGCCGTGCTGGTGCTGGAACCGCTG
GCCAGTTTGCAACCGGGATTCTGGTTGTCGTTTGCCGCCGTGGCCGTGCTGGTGCTGGCGTTCAGCGGGCGTTTGGGCGC
GTGGAGCGTCTGGCAGGCATGGACCCGTCCCCAATGGCTGATCGCCATTGGGTTGTTTCCGGTGCTGCTGGTGCTGGGGT
TGCCCATCAGCCTCAGCGCGCCGGTGGCCAATCTATTTGCGGTGCCGTGGATCAGCCTGGTGGTGCTGCCGTTGGCACTG
CTGGGCACCGCACTGTTGGCGGTGCCGTGGGTGGGAGAGGGCGTGTTGTGGCTGGCTGGCGGTGCGTTGGACGGCCTCTT
CACAAGCTTGGCGCTGCTGGCCGGGCTGCGCGCAGCGTGGGTGCCCGCCGACGTGCCGTTGGGTTATTGGTTGATCAGCG
TCGCGGGCGCGGTGCTTTTACTCTTGCCCAAAGGCGTGCCATTGCGGCTGCTCGGCTGGCCGATGCTGTTGTTGGCGGTT
TTTCCACCTAAGACCTTGGTCCCGCACGGGCAGGTGGAGGTGGTGCAATTGGATATCGGCCAGGGGCTGGCGGTGATCCT
GCGCACGCGCCATCACGCCATGCTCTACGACGTAGGCCCGCGCTCGGGGGCGGTTGACCTGGGCGCGCGCGTGGTGCTGC
CATCCCTGCAAAAGCTCGGGGTGGCGGCGTTGGATGCGATGGTAATCAGCCACGCCCACGCTGACCATGCCGGCGGTGCT
GCAGCGGTTGCCCGTGTACTGCCCGTTGGGCGGGTTATCGGCGGCGAGACCGAAGGGCTGCCGACCTTTCTCGCGGCCCA
ACCCTGTAACAGTGGCGAGCGCTGGGAGTGGGATGGCGTGTCATTCGAGGTGTGGCAATGGCCTGGCGCCACCAGCAGCA
ATCCGAAATCCTGCGTCTTGCAGGTACAGGCCCGTGGCGAGCGGTTGCTACTGACGGGCGATATTGATGAGGCGGCCGAG
AAAGCCTTTCTCGCGTCGCCCTTGGCGGTGCCGACCGATTGGCTGCAAGCGCCGCACCATGGCAGCCGCAGTTCCTCATC
CTTGGCGTTTTTGCAGCGGCTTGCGCCCAAGGCCGTGTTGATTTCCCGAGGCCGTGGTAATGCATTCGGGCATCCCCATC
CACAGGTGACGGCGCGTTACCAGGCGCTGGGCAGCCGCGTCTACGACAGCGCCAAGCAAGGTGCGGTGCGTGTGCAACTG
GGCGGTTTTAGAGCGCCGGTTGTTGCGCGCAGTCAACGGCGCTTCTGGCGCGAAGCGTTACCGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(500-682)

Domain of unknown function (DUF4131) (DUF4131)

(19-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.64

97.031

0.588
  comA Ralstonia pseudosolanacearum GMI1000

36.432

100

0.391