Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH96_RS17075 Genome accession   NZ_CP117436
Coordinates   3792132..3792767 (-) Length   211 a.a.
NCBI ID   WP_016969293.1    Uniprot ID   A0A0W0I137
Organism   Pseudomonas sp. FP2338     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3787132..3797767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH96_RS17040 (PSH96_17035) - 3787503..3788174 (+) 672 WP_305454017.1 Bax inhibitor-1/YccA family protein -
  PSH96_RS17045 (PSH96_17040) murB 3788247..3789266 (-) 1020 WP_305454018.1 UDP-N-acetylmuramate dehydrogenase -
  PSH96_RS17050 (PSH96_17045) - 3789263..3789727 (-) 465 WP_305454019.1 low molecular weight protein-tyrosine-phosphatase -
  PSH96_RS17055 (PSH96_17050) kdsB 3789727..3790491 (-) 765 WP_058419882.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH96_RS17060 (PSH96_17055) - 3790488..3790673 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH96_RS17065 (PSH96_17060) lpxK 3790697..3791707 (-) 1011 WP_305454020.1 tetraacyldisaccharide 4'-kinase -
  PSH96_RS17070 (PSH96_17065) - 3791707..3792135 (-) 429 WP_305454021.1 biopolymer transporter ExbD -
  PSH96_RS17075 (PSH96_17070) exbB 3792132..3792767 (-) 636 WP_016969293.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH96_RS17080 (PSH96_17075) comA 3792877..3795102 (-) 2226 WP_305454022.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH96_RS17085 (PSH96_17080) - 3795237..3795752 (+) 516 WP_056861726.1 DUF2062 domain-containing protein -
  PSH96_RS17090 (PSH96_17085) - 3795756..3797114 (-) 1359 WP_305460094.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23007.15 Da        Isoelectric Point: 6.8771

>NTDB_id=785062 PSH96_RS17075 WP_016969293.1 3792132..3792767(-) (exbB) [Pseudomonas sp. FP2338]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRITPEHLLGQVWGWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHEMERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDFVEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=785062 PSH96_RS17075 WP_016969293.1 3792132..3792767(-) (exbB) [Pseudomonas sp. FP2338]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATTATCTTGAGCTCCATCGCCGCACTCGGCATCGTTGC
CGAACGTTTGTGGACCCTGCGCGCCAGTCGCATAACCCCCGAGCATCTGCTTGGGCAGGTGTGGGGCTGGATCAAGAACA
AACAGCTGGATAAAGAAAAACTCAAGGAGTTGCGCGCCAACTCGCCGTTGGGTGAAATCCTTGCAGCGGGCCTCGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAATGCATCGAAGAGGCCGCTGCCCGCGTCATCCATGAAATGGAGCGCTATAT
CAATGCGCTCGGCACCATCGCGGCCATGGCGCCTTTGCTTGGCCTGTTGGGTACGGTGCTGGGCATGATCGACATTTTCA
GCTCGTTCATGGGTTCAGGCATGACCACCAACGCCGCCGTCCTGGCCGGTGGTATTTCCAAGGCCTTGATCACCACGGCA
GCGGGCCTGATGGTCGGTATTCCGTCGGTGTTTTTCCACCGCTTCCTGCAGCGTCGCATCGATGAACTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGATGTCGATTTCGTTGAGGGCCGAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0I137

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.886

100

0.839