Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSH87_RS16495 Genome accession   NZ_CP117435
Coordinates   3675218..3677458 (-) Length   746 a.a.
NCBI ID   WP_305430262.1    Uniprot ID   -
Organism   Pseudomonas sp. FP453     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3670218..3682458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH87_RS16460 (PSH87_16455) murB 3670650..3671669 (-) 1020 WP_305430257.1 UDP-N-acetylmuramate dehydrogenase -
  PSH87_RS16465 (PSH87_16460) - 3671666..3672130 (-) 465 WP_207043887.1 low molecular weight protein-tyrosine-phosphatase -
  PSH87_RS16470 (PSH87_16465) kdsB 3672130..3672894 (-) 765 WP_017736028.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH87_RS16475 (PSH87_16470) - 3672891..3673076 (-) 186 WP_017736029.1 Trm112 family protein -
  PSH87_RS16480 (PSH87_16475) lpxK 3673100..3674110 (-) 1011 WP_305430259.1 tetraacyldisaccharide 4'-kinase -
  PSH87_RS16485 (PSH87_16480) - 3674110..3674538 (-) 429 WP_017736031.1 biopolymer transporter ExbD -
  PSH87_RS16490 (PSH87_16485) exbB 3674535..3675170 (-) 636 WP_017736032.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH87_RS16495 (PSH87_16490) comA 3675218..3677458 (-) 2241 WP_305430262.1 ComEC/Rec2 family competence protein Machinery gene
  PSH87_RS16500 (PSH87_16495) - 3677606..3678121 (+) 516 WP_017736034.1 DUF2062 domain-containing protein -
  PSH87_RS16505 (PSH87_16500) - 3678125..3679495 (-) 1371 WP_305430264.1 sensor histidine kinase -
  PSH87_RS16510 (PSH87_16505) - 3679482..3680210 (-) 729 WP_305430265.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 746 a.a.        Molecular weight: 80707.84 Da        Isoelectric Point: 10.5694

>NTDB_id=785038 PSH87_RS16495 WP_305430262.1 3675218..3677458(-) (comA) [Pseudomonas sp. FP453]
MFAFALGLLALRYLPALPPVGWLLAMPVVALMLLPFRTYWLAFFLFGLSWACLSAQWALDDRLRPALDGQTRWLEGRVVG
LPQQTGSGVRFELADSRSRNARLPKRIQVSWHGGPPVHSGERWRLAVTLKRPSGLLNFHGFDREAWLLAQRIGATGSVKD
GVRLAPARNAWRDNVRQRLLAVDAQGREAAVAALVLGDGSGLAPQDWRVLQATGTVHLLVISGQHIGLLSGLIYGLIAGL
ARYGCWPRTLPWLPWACGLAFAAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLALSGVLVLEPLASLQ
AGFWLSFAAVAVLVLAFGGRLGAWSFWHVWTRPQWLIAIGLLPILLVLGLPISLSAPLANLFAVPWISLVVLPLSLLGTA
LLPVPWLGEGLLWLAGGALDGLFKGLELLAGQVPAWVPGEVPLGYWLISLLGAVLLLLPKGVPFRLLGWPMLLLAVCPPR
EPVPHGQVDVLQLDVGQGQALILRTRHHTLLYDAGPRSGMVDLGAQVVLPALKKLGVGQLDLMLLSHGDADHAGGAAAVA
RGLAVRRVVGGETEGLPAFLGTRPCVSGERWEWDGVVFELWQWPDAVEGNAKSCVLQVQAGGERLLLTGDIDRAAEKALL
ASPLAVPTDWLQAPHHGSRSSSSWPFVQRLSPKSVLISRGRGNAFGHPHPQVIERYQALGSRIYDSAEQGAVRLQLGAFA
PPVVARSQRRFWREALPSAPVVGEPR

Nucleotide


Download         Length: 2241 bp        

>NTDB_id=785038 PSH87_RS16495 WP_305430262.1 3675218..3677458(-) (comA) [Pseudomonas sp. FP453]
ATGTTCGCGTTTGCACTGGGGCTGCTGGCGTTGCGCTATTTGCCGGCATTGCCACCGGTCGGTTGGCTGCTGGCCATGCC
GGTGGTGGCGTTGATGCTGTTGCCGTTTCGCACCTATTGGCTGGCGTTCTTCCTTTTCGGCTTGAGTTGGGCGTGCCTGA
GCGCGCAGTGGGCGCTGGATGATCGGCTGCGGCCGGCACTGGACGGGCAGACGCGCTGGCTGGAGGGGCGTGTCGTCGGG
TTGCCGCAGCAGACGGGCAGCGGTGTGCGTTTCGAGCTGGCCGACAGTCGGTCGCGCAATGCCCGCTTGCCCAAGCGTAT
CCAGGTGTCCTGGCACGGCGGGCCGCCGGTGCACAGCGGTGAGCGCTGGCGCCTGGCGGTCACCCTCAAGCGGCCCTCCG
GGTTGCTCAATTTCCATGGGTTTGACCGCGAAGCCTGGCTGCTGGCCCAGCGCATTGGCGCCACTGGCTCGGTAAAGGAT
GGCGTGCGTCTGGCCCCGGCGCGCAATGCCTGGCGCGACAACGTACGCCAGCGCCTGCTGGCCGTGGATGCCCAGGGCCG
TGAAGCGGCGGTGGCCGCGCTGGTGCTGGGCGACGGCTCCGGGCTGGCACCGCAGGATTGGCGGGTGTTGCAGGCCACTG
GCACGGTGCACCTGCTGGTGATTTCCGGCCAGCACATTGGCTTGCTCTCGGGCCTGATCTACGGGCTGATCGCCGGGCTG
GCACGCTACGGCTGCTGGCCGCGAACCTTGCCTTGGCTGCCGTGGGCCTGTGGCCTGGCGTTTGCTGCGGCGTTGGGTTA
CGGCTTGCTGGCGGGGTTCGGCGTGCCGGTGCAACGCGCCTGCGTGATGGTCGGGCTGGTGCTGTTGTGGCGTTTGCGGT
TTCGCCACTTGGGGGTGTGGTGGCCGTTGTTGCTCGCGCTCAGTGGGGTGTTGGTGCTTGAGCCGTTGGCCAGCCTGCAA
GCGGGGTTCTGGTTGTCGTTTGCGGCGGTTGCGGTCCTGGTGCTGGCGTTCGGTGGGCGTTTGGGGGCGTGGAGTTTCTG
GCACGTGTGGACCCGTCCGCAGTGGCTGATTGCTATCGGTTTGTTGCCGATCTTGCTGGTGCTTGGGTTGCCCATCAGCC
TCAGTGCGCCGTTGGCCAACCTGTTCGCAGTGCCGTGGATCAGCCTGGTGGTGTTGCCGTTGTCCTTGCTGGGGACGGCG
CTGTTGCCGGTGCCATGGCTGGGCGAGGGGCTGTTGTGGTTGGCGGGCGGTGCACTTGATGGGCTGTTCAAGGGCCTTGA
ACTGTTGGCCGGGCAAGTGCCGGCCTGGGTTCCCGGCGAAGTCCCCTTGGGGTACTGGCTGATCAGCCTGTTGGGCGCGG
TGTTGCTGCTGCTGCCCAAAGGCGTGCCGTTTCGGCTGCTGGGCTGGCCGATGCTGCTGTTGGCGGTGTGCCCGCCCAGG
GAACCGGTGCCCCATGGCCAGGTGGACGTGTTGCAACTGGATGTGGGGCAGGGCCAGGCGTTGATCCTGCGTACCCGCCA
CCACACCTTGCTGTACGACGCTGGCCCGCGTTCGGGGATGGTTGATCTGGGTGCGCAGGTGGTGTTGCCCGCCTTGAAAA
AACTCGGGGTAGGGCAGTTGGACCTGATGCTGCTCAGCCATGGGGATGCCGATCACGCTGGCGGCGCGGCGGCGGTGGCG
CGCGGGTTGGCCGTCCGCCGCGTGGTGGGTGGCGAGACCGAGGGGTTGCCGGCGTTTCTCGGCACCCGGCCGTGCGTGAG
CGGTGAGCGCTGGGAATGGGATGGCGTGGTGTTTGAGCTATGGCAATGGCCTGATGCTGTTGAAGGCAATGCGAAGTCCT
GCGTGTTGCAGGTTCAGGCCGGTGGCGAGCGCCTGTTGCTGACCGGCGATATCGACCGCGCCGCCGAAAAGGCTTTGCTC
GCATCGCCCCTGGCGGTACCAACCGATTGGCTGCAAGCGCCCCACCATGGCAGTCGCAGCTCTTCGTCCTGGCCCTTTGT
GCAGCGACTTTCGCCCAAGTCGGTGCTGATTTCCCGAGGTCGTGGCAATGCGTTCGGGCATCCCCACCCGCAAGTGATAG
AGCGATATCAGGCGCTGGGCAGCCGTATCTACGACAGCGCCGAGCAAGGTGCCGTGCGCCTGCAATTGGGCGCCTTCGCG
CCACCGGTTGTTGCGCGCAGTCAACGTCGCTTCTGGCGCGAAGCGTTACCCTCGGCGCCTGTGGTCGGCGAACCCCGCTG
A

Domains

Predicted by InterproScan.

Competence protein (Competence)

(194-460)

Domain of unknown function (DUF4131) (DUF4131)

(16-161)

Metallo-beta-lactamase superfamily (Lactamase_B)

(494-660)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.64

96.381

0.584
  comA Ralstonia pseudosolanacearum GMI1000

36.192

100

0.385