Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSH87_RS16490 Genome accession   NZ_CP117435
Coordinates   3674535..3675170 (-) Length   211 a.a.
NCBI ID   WP_017736032.1    Uniprot ID   -
Organism   Pseudomonas sp. FP453     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3669535..3680170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH87_RS16455 (PSH87_16450) - 3669916..3670587 (+) 672 WP_305430256.1 Bax inhibitor-1/YccA family protein -
  PSH87_RS16460 (PSH87_16455) murB 3670650..3671669 (-) 1020 WP_305430257.1 UDP-N-acetylmuramate dehydrogenase -
  PSH87_RS16465 (PSH87_16460) - 3671666..3672130 (-) 465 WP_207043887.1 low molecular weight protein-tyrosine-phosphatase -
  PSH87_RS16470 (PSH87_16465) kdsB 3672130..3672894 (-) 765 WP_017736028.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH87_RS16475 (PSH87_16470) - 3672891..3673076 (-) 186 WP_017736029.1 Trm112 family protein -
  PSH87_RS16480 (PSH87_16475) lpxK 3673100..3674110 (-) 1011 WP_305430259.1 tetraacyldisaccharide 4'-kinase -
  PSH87_RS16485 (PSH87_16480) - 3674110..3674538 (-) 429 WP_017736031.1 biopolymer transporter ExbD -
  PSH87_RS16490 (PSH87_16485) exbB 3674535..3675170 (-) 636 WP_017736032.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH87_RS16495 (PSH87_16490) comA 3675218..3677458 (-) 2241 WP_305430262.1 ComEC/Rec2 family competence protein Machinery gene
  PSH87_RS16500 (PSH87_16495) - 3677606..3678121 (+) 516 WP_017736034.1 DUF2062 domain-containing protein -
  PSH87_RS16505 (PSH87_16500) - 3678125..3679495 (-) 1371 WP_305430264.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22932.08 Da        Isoelectric Point: 6.8771

>NTDB_id=785037 PSH87_RS16490 WP_017736032.1 3674535..3675170(-) (exbB) [Pseudomonas sp. FP453]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKSKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=785037 PSH87_RS16490 WP_017736032.1 3674535..3675170(-) (exbB) [Pseudomonas sp. FP453]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCTATCGCCGCACTCGGCATCGTTGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAACATCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAGCA
AACAGCTCGACAAGGAAAAACTCAAGGAGCTGCGGGCCAATTCGCCCCTGGGTGAGATCCTCGCCGCTGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCCCGGGTCATTCATGAACTGGAGCGCTATAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCATTGCTCGGTTTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCCGCTGTGCTCGCCGGTGGTATTTCCAAGGCGTTGATCACCACCGCC
GCTGGCCTGATGGTTGGTATTCCTTCGGTGTTCTTCCACCGTTTCCTGCAACGGCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGTTGGTGGAAGTGGTGCAGGGCGACCGTGATGTGGACCTGGTCGAGGGCCGAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848