Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PSH66_RS17895 Genome accession   NZ_CP117432
Coordinates   3943842..3946067 (-) Length   741 a.a.
NCBI ID   WP_305427354.1    Uniprot ID   -
Organism   Pseudomonas sp. FP597     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3938842..3951067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSH66_RS17860 (PSH66_17855) murB 3939256..3940275 (-) 1020 WP_003174665.1 UDP-N-acetylmuramate dehydrogenase -
  PSH66_RS17865 (PSH66_17860) - 3940272..3940736 (-) 465 WP_003174666.1 low molecular weight protein-tyrosine-phosphatase -
  PSH66_RS17870 (PSH66_17865) kdsB 3940736..3941500 (-) 765 WP_003174667.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSH66_RS17875 (PSH66_17870) - 3941497..3941682 (-) 186 WP_003174668.1 Trm112 family protein -
  PSH66_RS17880 (PSH66_17875) lpxK 3941706..3942716 (-) 1011 WP_141064397.1 tetraacyldisaccharide 4'-kinase -
  PSH66_RS17885 (PSH66_17880) - 3942716..3943144 (-) 429 WP_078733666.1 biopolymer transporter ExbD -
  PSH66_RS17890 (PSH66_17885) exbB 3943141..3943776 (-) 636 WP_042944912.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSH66_RS17895 (PSH66_17890) comA 3943842..3946067 (-) 2226 WP_305427354.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSH66_RS17900 (PSH66_17895) - 3946203..3946718 (+) 516 WP_078825180.1 DUF2062 domain-containing protein -
  PSH66_RS17905 (PSH66_17900) - 3946722..3948089 (-) 1368 WP_305427355.1 sensor histidine kinase -
  PSH66_RS17910 (PSH66_17905) - 3948079..3948807 (-) 729 WP_078825182.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80179.97 Da        Isoelectric Point: 10.6620

>NTDB_id=784965 PSH66_RS17895 WP_305427354.1 3943842..3946067(-) (comA) [Pseudomonas sp. FP597]
MKTGMFALALGLLTLGLLPALPSTGWLIALLVLALMLLPFRTYPLAFFLLGLSWACISAQGALDDRLAPSLDGQTRWVEG
RVSGLAQQTGDSVRFELSDSRSRKARLPKRIRVSWHGGPTVRSGERWRLAVTLKRPSGLLNFHGFDREAWLLAQRIGATG
SVKDGERLTPARNAWRDSVRQRLMAVDAQGREAGLAALVLGDGSGLAFDDWHVLQATGTVHLLVISGQHIGLLAGLVYGV
VALLARYGCWPRYWPWLPWACGLAFAAALGYGLLAGFGVPVQRACVMVGLVLVWRLRFRHLGLWWPLLLALNGVLVLEPL
ASLQPGFWLSFAAVAVLVLAFGGRLGPWSAWQAWTRPQWLIAIGLFPVLLVLGLPVSVSAPLANLVAVPWISLVVLPLAL
LGTALLWVPFLGAGIVWLAGGALDGLFQGLAWLAGQVPAWIPAEVPLGYWCVSQAGAILLLLPKGVPFRLLGWPMLLLAV
FPPREPVPQGRVEVEQLDVGQGQALILRTRHHALLYDAGPRSGAVDLGARVVLPTLKKLGVGTLDMMLLSHADADHAGGA
AAVARGVSIKRVVGGETEGLPTFLATQPCVSGERWVWDGVQFELWQWPEAITGNPKSCVLQVQANGERLLLTGDIDRAAE
RAFLASPLAVRTDWLQAPHHGSHSSSSWPFVQQLAPASVLISRGRGNAFGHPHPQVLQRYQALGSRVYDSAEQGAIRLQL
GAFAPPIVARSQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=784965 PSH66_RS17895 WP_305427354.1 3943842..3946067(-) (comA) [Pseudomonas sp. FP597]
ATGAAAACAGGGATGTTTGCGCTTGCGCTGGGGCTGCTCACTTTGGGGTTGCTGCCGGCGCTGCCGTCCACCGGCTGGCT
GATAGCCCTGTTGGTACTGGCGCTGATGCTGTTGCCGTTTCGCACGTACCCGTTGGCGTTTTTCCTGCTGGGGCTGAGCT
GGGCATGCATCAGCGCGCAAGGGGCGCTCGATGACCGCCTGGCACCGTCCCTCGACGGCCAGACGCGCTGGGTGGAAGGG
CGTGTCAGTGGGCTGGCGCAGCAAACCGGTGACAGTGTGCGTTTTGAACTGTCCGACAGCCGGTCACGCAAGGCGCGGTT
GCCCAAGCGTATCCGAGTGTCCTGGCATGGCGGACCGACGGTGCGCAGCGGTGAGCGCTGGCGTTTGGCAGTGACCCTCA
AGCGACCCTCCGGGCTGCTTAATTTCCATGGCTTTGACCGGGAAGCCTGGCTGCTGGCCCAGCGCATCGGCGCGACGGGC
TCGGTGAAGGACGGTGAGCGTTTGACGCCGGCGCGCAATGCCTGGCGCGACAGCGTTCGCCAGCGGTTGATGGCGGTGGA
TGCGCAGGGCCGTGAGGCGGGGCTGGCCGCCCTGGTGCTGGGCGATGGTTCCGGATTGGCCTTCGATGACTGGCACGTAT
TGCAGGCCACCGGCACCGTGCACCTGCTGGTCATTTCCGGGCAGCACATCGGGCTGCTGGCGGGGTTGGTCTACGGGGTG
GTCGCGCTGCTGGCGCGGTATGGGTGCTGGCCGCGGTACTGGCCGTGGTTACCCTGGGCCTGTGGCCTGGCGTTTGCCGC
CGCGCTGGGCTATGGCCTGCTGGCGGGGTTCGGCGTGCCGGTGCAGCGCGCCTGCGTGATGGTGGGCCTGGTGTTGGTGT
GGCGTTTGCGTTTTCGTCATCTGGGGCTGTGGTGGCCGCTGTTGCTGGCACTCAATGGGGTGCTTGTGCTTGAGCCGTTG
GCCAGTTTGCAGCCGGGGTTCTGGTTGTCGTTCGCGGCGGTCGCCGTGCTGGTCCTGGCGTTCGGCGGGCGCTTGGGCCC
CTGGAGTGCCTGGCAGGCCTGGACCCGTCCCCAGTGGTTGATTGCCATTGGTCTGTTTCCCGTATTGCTGGTGTTGGGGT
TGCCTGTCAGCGTCAGTGCACCGCTGGCCAATCTGGTTGCGGTGCCGTGGATCAGCCTGGTGGTGTTGCCGCTGGCATTG
CTGGGGACGGCGTTGCTGTGGGTGCCGTTTCTGGGGGCGGGGATTGTGTGGCTGGCGGGTGGCGCGCTGGATGGCTTGTT
CCAGGGATTGGCATGGCTCGCTGGGCAAGTGCCCGCCTGGATACCGGCCGAGGTGCCCTTGGGGTATTGGTGCGTGAGCC
AGGCGGGCGCGATATTGTTGCTGTTGCCCAAAGGCGTGCCGTTTCGCCTGTTGGGCTGGCCGATGCTGCTGTTGGCGGTG
TTTCCACCGCGCGAGCCGGTGCCCCAAGGGCGGGTGGAGGTGGAGCAGCTGGATGTGGGGCAGGGCCAGGCGCTGATCCT
GCGCACCCGTCATCATGCCTTGCTCTACGATGCGGGCCCGCGCTCGGGAGCGGTTGACCTTGGCGCTCGGGTGGTGCTGC
CGACGTTGAAGAAACTCGGGGTCGGGACGCTGGACATGATGTTGCTTAGCCATGCGGACGCCGATCATGCCGGTGGCGCT
GCCGCTGTTGCTCGGGGGGTGTCGATCAAACGGGTGGTGGGCGGAGAAACCGAGGGGCTGCCGACCTTTCTCGCGACTCA
GCCGTGTGTCAGCGGTGAGCGGTGGGTGTGGGACGGTGTGCAATTCGAATTGTGGCAATGGCCTGAAGCTATCACTGGCA
ACCCGAAATCCTGCGTATTGCAGGTGCAGGCCAATGGCGAGCGGCTGCTGCTCACCGGGGATATCGATCGCGCCGCCGAG
CGGGCGTTTCTCGCCTCACCGCTGGCCGTGCGCACCGATTGGCTGCAAGCGCCGCACCATGGCAGCCACAGTTCGTCGTC
CTGGCCCTTCGTGCAGCAACTGGCCCCGGCATCGGTGCTGATTTCCAGGGGCCGTGGCAATGCCTTCGGTCATCCTCATC
CGCAAGTGCTGCAGCGCTACCAGGCGCTGGGCAGCCGCGTTTACGACAGCGCCGAACAGGGAGCCATTCGCTTGCAACTG
GGCGCGTTTGCACCCCCAATCGTTGCGCGCAGTCAACGGCGTTTCTGGCGCGAGCGGTTACCCTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-664)

Domain of unknown function (DUF4131) (DUF4131)

(19-167)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.556

97.166

0.588
  comA Ralstonia pseudosolanacearum GMI1000

35.088

100

0.378